Gm47421 Pseudogene Detail

Summary

• Symbol
  Gm47421
• Name
  predicted gene, 47421

• Feature Type
  pseudogene
• IDs
  MGI:6096362
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:23515696-23515965 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096362	pseudogene	Chr12:23515696-23515965 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002557	pseudogene	Chr3:58496859-58497128 (+)
CAST/EiJ	ENSTCUG00005040204	pseudogene	ChrX:32537573-32537842 (-)
CAST/EiJ	ENSTCUG00005034979	pseudogene	ChrX:27061669-27061938 (-)
CAST/EiJ	ENSTCUG00005000382	pseudogene	Chr3:3750049-3750318 (-)
CAST/EiJ	ENSTCUG00005034130	pseudogene	Chr2:77300055-77300324 (+)
CAST/EiJ	ENSTCUG00005008242	pseudogene	ChrX:107880203-107880472 (+)
CAST/EiJ	ENSTCUG00005044001	pseudogene	Chr7:101168660-101168929 (-)
CAST/EiJ	ENSTCUG00005035010	pseudogene	ChrX:27324193-27324462 (-)
CAST/EiJ	ENSTCUG00005038871	pseudogene	Chr6:37448646-37448915 (-)
CAST/EiJ	ENSTCUG00005001749	pseudogene	Chr2:42309908-42310177 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000012260	pseudogene	Chr12:16579010-16579279 (-)
JF1/MsJ	ENSUMUG00000017841	pseudogene	Chr8:105645705-105645974 (+)
JF1/MsJ	ENSUMUG00000017803	pseudogene	Chr8:103256373-103256642 (-)
JF1/MsJ	ENSUMUG00000013856	pseudogene	Chr12:35143048-35143317 (-)
JF1/MsJ	ENSUMUG00000022322	pseudogene	Chr8:116572688-116572957 (+)
JF1/MsJ	ENSUMUG00000017858	pseudogene	Chr8:106647337-106647606 (+)
JF1/MsJ	ENSUMUG00000043240	pseudogene	Chr13:58288388-58288657 (+)
JF1/MsJ	ENSUMUG00000051132	pseudogene	Chr8:99873542-99873811 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010011512	pseudogene	Chr14:70962134-70962407 (-)
PWK/PhJ	ENSLUMG00010023771	pseudogene	Chr14:17274417-17274686 (-)
PWK/PhJ	ENSLUMG00010004712	pseudogene	Chr14:86574812-86575081 (-)
PWK/PhJ	ENSLUMG00010001373	pseudogene	Chr14:101352309-101352578 (+)
PWK/PhJ	ENSLUMG00010015169	pseudogene	Chr15:18625540-18625809 (+)
PWK/PhJ	ENSLUMG00010025609	pseudogene	Chr13:57434234-57434503 (-)
PWK/PhJ	ENSLUMG00010002799	pseudogene	Chr12:52574609-52574878 (-)
PWK/PhJ	ENSLUMG00010037322	pseudogene	Chr1:173024411-173024680 (+)
PWK/PhJ	ENSLUMG00010022713	pseudogene	Chr3:140986651-140986920 (-)
PWK/PhJ	ENSLUMG00010045159	pseudogene	Chr14:40982299-40982568 (+)
SPRET/EiJ	ENSMSPG00010052170	pseudogene	Chr2:82945191-82945460 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm47421
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32

• Ensembl
  ENSMUSG00000113451 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113451	Ensembl Gene Model | MGI Sequence Detail	270	C57BL/6J
transcript	ENSMUST00000222220	Ensembl | MGI Sequence Detail	270	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;