Gm47420 Pseudogene Detail

Summary

• Symbol
  Gm47420
• Name
  predicted gene, 47420

• Feature Type
  pseudogene
• IDs
  MGI:6096361
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:23485218-23485329 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096361	pseudogene	Chr12:23485218-23485329 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	ENSMUSG00180010595	pseudogene	Chr12:17127450-17127561 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005834	pseudogene	Chr12:17615396-17615507 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185004447	pseudogene	Chr12:16726110-16726218 (-)
DBA/2J	ENSMUSG00185003879	pseudogene	Chr12:17645586-17645697 (-)
FVB/NJ	ENSMUSG00205002118	pseudogene	Chr12:17046105-17046213 (-)
FVB/NJ	ENSMUSG00205002116	pseudogene	Chr12:15651709-15651822 (-)
FVB/NJ	ENSMUSG00205002114	pseudogene	Chr12:14831978-14832088 (+)
JF1/MsJ	ENSUMUG00000006740	pseudogene	Chr12:22400533-22400644 (-)
LP/J	ENSMUSG00230007270	pseudogene	Chr12:24612289-24612400 (-)
LP/J	ENSMUSG00230008362	pseudogene	Chr12:23328886-23328997 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225034297	pseudogene	Chr12:26795392-26795503 (-)
NZO/HlLtJ	ENSMUSG00225035766	pseudogene	Chr12:25279284-25279395 (+)
PWK/PhJ	ENSLUMG00010004600	pseudogene	Chr12:17239679-17239790 (-)
SPRET/EiJ	ENSMSPG00010003149	pseudogene	Chr12:16257759-16257870 (+)
WSB/EiJ	ENSIUOG00005001704	pseudogene	Chr12:15587235-15587348 (-)
WSB/EiJ	ENSIUOG00005001703	pseudogene	Chr12:16062877-16062990 (+)

Homology

• Gene Tree
  Gm47420
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000113824 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113824	Ensembl Gene Model | MGI Sequence Detail	112	C57BL/6J
transcript	ENSMUST00000221284	Ensembl | MGI Sequence Detail	112	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;