Gm47407 Gene Detail

Summary

• Symbol
  Gm47407
• Name
  predicted gene, 47407

• Feature Type
  lncRNA gene
• IDs
  MGI:6096339
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:10567723-10588847 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  658 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096339	lncRNA gene	Chr13:10567723-10588847 (+)
129S1/SvImJ	ENSMUSG00200007272	lncRNA gene	Chr13:7766247-7787363 (+)
A/J	ENSMUSG00195013199	lncRNA gene	Chr13:7149337-7170465 (+)
AKR/J	ENSMUSG00220013783	lncRNA gene	Chr13:7396192-7417350 (+)
BALB/cJ	ENSMUSG00180010128	lncRNA gene	Chr13:7555058-7576189 (+)
C3H/HeJ	ENSMUSG00175008732	lncRNA gene	Chr13:7603373-7624495 (+)
C57BL/6NJ	ENSMUSG00215022742	lncRNA gene	Chr13:7856439-7877567 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026432	lncRNA gene	Chr13:7754876-7776082 (+)
CBA/J	ENSMUSG00210022970	lncRNA gene	Chr13:7130869-7152004 (+)
DBA/2J	ENSMUSG00185025265	lncRNA gene	Chr13:7819746-7840870 (+)
FVB/NJ	ENSMUSG00205028705	lncRNA gene	Chr13:7598189-7619314 (+)
JF1/MsJ	ENSUMUG00000013015	lncRNA gene	Chr13:7844522-7865677 (+)
LP/J	ENSMUSG00230008073	lncRNA gene	Chr13:17291861-17313006 (+)
NOD/ShiLtJ	ENSMUSG00190013861	lncRNA gene	Chr13:7253045-7274196 (+)
NZO/HlLtJ	ENSMUSG00225032847	lncRNA gene	Chr13:11196639-11217787 (+)
PWK/PhJ	ENSLUMG00010017643	lncRNA gene	Chr13:7209552-7230663 (+)
SPRET/EiJ	ENSMSPG00010026265	lncRNA gene	Chr13:7203795-7217946 (+)
WSB/EiJ	ENSIUOG00005023440	lncRNA gene	Chr13:7171252-7171353 (-)

Homology

• Gene Tree
  Gm47407
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113758 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113758	Ensembl Gene Model | MGI Sequence Detail	21125	C57BL/6J
transcript	ENSMUST00000221705	Ensembl | MGI Sequence Detail	828	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;