Gm47404 Gene Detail

Summary

• Symbol
  Gm47404
• Name
  predicted gene, 47404

• Feature Type
  lncRNA gene
• IDs
  MGI:6096334
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:10225820-10230843 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096334	lncRNA gene	Chr13:10225820-10230843 (-)
129S1/SvImJ	ENSMUSG00200053667	lncRNA gene	Chr2:24517864-24522986 (+)
129S1/SvImJ	ENSMUSG00200007337	lncRNA gene	Chr13:7417052-7422075 (-)
129S1/SvImJ	ENSMUSG00200007394	lncRNA gene	Chr13:7411216-7416239 (-)
129S1/SvImJ	ENSMUSG00200007397	lncRNA gene	Chr13:7422888-7427911 (-)
A/J	ENSMUSG00195013264	lncRNA gene	Chr13:6807322-6812345 (-)
AKR/J	ENSMUSG00220013834	lncRNA gene	Chr13:7055456-7059561 (-)
BALB/cJ	ENSMUSG00180010224	lncRNA gene	Chr13:7213092-7218115 (-)
C3H/HeJ	ENSMUSG00175008754	lncRNA gene	Chr13:7261427-7266450 (-)
C57BL/6NJ	ENSMUSG00215023304	lncRNA gene	Chr13:7514493-7519516 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026551	lncRNA gene	Chr13:7422260-7426530 (-)
CBA/J	ENSMUSG00210022990	lncRNA gene	Chr13:6788969-6793992 (-)
DBA/2J	ENSMUSG00185025337	lncRNA gene	Chr13:7477816-7482839 (-)
FVB/NJ	ENSMUSG00205029198	lncRNA gene	Chr13:7252734-7257757 (-)
JF1/MsJ	ENSUMUG00000013385	lncRNA gene	Chr13:7503959-7508042 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190013964	lncRNA gene	Chr13:6912473-6916562 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010026454	lncRNA gene	Chr13:6848979-6853213 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm47404
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000113261 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113261	Ensembl Gene Model | MGI Sequence Detail	5024	C57BL/6J
transcript	ENSMUST00000222625	Ensembl | MGI Sequence Detail	2705	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;