Gm47399 Pseudogene Detail

Summary

• Symbol
  Gm47399
• Name
  predicted gene, 47399

• Feature Type
  pseudogene
• IDs
  MGI:6096327
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:52041819-52042292 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  191 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096327	pseudogene	Chr12:52041819-52042292 (+)
129S1/SvImJ	ENSMUSG00200032232	pseudogene	Chr12:44008274-44008747 (+)
A/J	ENSMUSG00195019175	pseudogene	Chr12:46571303-46571776 (+)
AKR/J	ENSMUSG00220028586	pseudogene	Chr12:44605918-44606391 (+)
BALB/cJ	ENSMUSG00180006419	pseudogene	Chr12:45563053-45563526 (+)
C3H/HeJ	ENSMUSG00175012280	pseudogene	Chr12:48633652-48634125 (+)
C57BL/6NJ	ENSMUSG00215020131	pseudogene	Chr12:44957732-44958205 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009545	pseudogene	Chr12:45123853-45124323 (+)
CBA/J	ENSMUSG00210010186	pseudogene	Chr12:45108012-45108485 (+)
DBA/2J	ENSMUSG00185015003	pseudogene	Chr12:47075545-47076018 (+)
FVB/NJ	ENSMUSG00205015093	pseudogene	Chr12:44898480-44898953 (+)
JF1/MsJ	ENSUMUG00000010723	pseudogene	Chr12:51231771-51232244 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190016742	pseudogene	Chr12:44098459-44098932 (+)
NZO/HlLtJ	ENSMUSG00225041187	pseudogene	Chr12:56244726-56245199 (+)
PWK/PhJ	ENSLUMG00010017123	pseudogene	Chr12:45299755-45300225 (+)
SPRET/EiJ	ENSMSPG00010016642	pseudogene	Chr12:46610269-46610731 (+)
WSB/EiJ	ENSIUOG00005003936	pseudogene	Chr12:44931552-44932025 (+)

Homology

• Gene Tree
  Gm47399
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000112064 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112064	Ensembl Gene Model | MGI Sequence Detail	474	C57BL/6J
transcript	ENSMUST00000218223	Ensembl | MGI Sequence Detail	474	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;