Gm47397 Gene Detail

Summary

• Symbol
  Gm47397
• Name
  predicted gene, 47397

• Feature Type
  lncRNA gene
• IDs
  MGI:6096323
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:97065480-97069238 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  185 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096323	lncRNA gene	Chr12:97065480-97069238 (-)
129S1/SvImJ	ENSMUSG00200017775	lncRNA gene	Chr12:88859897-88863657 (-)
A/J	ENSMUSG00195021051	lncRNA gene	Chr12:91405014-91408770 (-)
AKR/J	ENSMUSG00220017864	lncRNA gene	Chr12:89295441-89299203 (-)
BALB/cJ	ENSMUSG00180015692	lncRNA gene	Chr12:90548875-90552633 (-)
C3H/HeJ	ENSMUSG00175034100	lncRNA gene	Chr12:93187519-93191275 (-)
C57BL/6NJ	ENSMUSG00215020690	lncRNA gene	Chr12:89848432-89852190 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006416	lncRNA gene	Chr12:89492337-89497570 (-)
CBA/J	ENSMUSG00210018977	lncRNA gene	Chr12:90222149-90225899 (-)
DBA/2J	ENSMUSG00185046110	lncRNA gene	Chr12:91997110-92000868 (-)
FVB/NJ	ENSMUSG00205000732	lncRNA gene	Chr12:89381542-89385291 (-)
JF1/MsJ	ENSUMUG00000026140	lncRNA gene	Chr12:96680400-96684164 (-)
LP/J	ENSMUSG00230004644	lncRNA gene	Chr12:99125078-99128828 (-)
NOD/ShiLtJ	ENSMUSG00190005399	lncRNA gene	Chr12:95928223-95931983 (+)
NZO/HlLtJ	ENSMUSG00225033585	lncRNA gene	Chr12:100829115-100832865 (-)
PWK/PhJ	ENSLUMG00010003564	lncRNA gene	Chr12:90180258-90185454 (-)
SPRET/EiJ	ENSMSPG00010019002	lncRNA gene	Chr12:92619716-92623954 (-)
WSB/EiJ	ENSIUOG00005002159	lncRNA gene	Chr12:89218246-89222002 (-)

Homology

• Gene Tree
  Gm47397
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112635 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112635	Ensembl Gene Model | MGI Sequence Detail	3759	C57BL/6J
transcript	ENSMUST00000217786	Ensembl | MGI Sequence Detail	460	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;