Gm47389 Gene Detail

Summary

• Symbol
  Gm47389
• Name
  predicted gene, 47389

• Feature Type
  lncRNA gene
• IDs
  MGI:6096310
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:44591654-44593261 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096310	lncRNA gene	Chr10:44591654-44593261 (+)
129S1/SvImJ	ENSMUSG00200007316	lncRNA gene	Chr10:41489471-41491078 (+)
A/J	ENSMUSG00195002971	lncRNA gene	Chr10:41759644-41761251 (+)
AKR/J	ENSMUSG00220006505	lncRNA gene	Chr10:41445494-41447101 (+)
BALB/cJ	ENSMUSG00180012344	lncRNA gene	Chr10:41848868-41850475 (+)
C3H/HeJ	ENSMUSG00175010332	lncRNA gene	Chr10:41636331-41637938 (+)
C57BL/6NJ	ENSMUSG00215002376	lncRNA gene	Chr10:41386352-41387959 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008715	lncRNA gene	Chr10:41838537-41840148 (+)
CBA/J	ENSMUSG00210008458	lncRNA gene	Chr10:41531977-41533584 (+)
DBA/2J	ENSMUSG00185003220	lncRNA gene	Chr10:41683510-41685117 (+)
FVB/NJ	ENSMUSG00205004920	lncRNA gene	Chr10:41606454-41608061 (+)
JF1/MsJ	ENSUMUG00000031658	lncRNA gene	Chr10:41521158-41522767 (+)
LP/J	ENSMUSG00230005989	lncRNA gene	Chr10:43487443-43489050 (+)
NOD/ShiLtJ	ENSMUSG00190005507	lncRNA gene	Chr10:41811703-41813310 (+)
NZO/HlLtJ	ENSMUSG00225018845	lncRNA gene	Chr10:47773332-47774939 (+)
PWK/PhJ	ENSLUMG00010004691	lncRNA gene	Chr10:41599011-41600618 (+)
SPRET/EiJ	ENSMSPG00010013295	lncRNA gene	Chr10:42651715-42653318 (+)
WSB/EiJ	ENSIUOG00005015180	lncRNA gene	Chr10:41361225-41362832 (+)

Homology

• Gene Tree
  Gm47389
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111362 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111362	Ensembl Gene Model | MGI Sequence Detail	1608	C57BL/6J
transcript	ENSMUST00000216787	Ensembl | MGI Sequence Detail	646	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;