Gm47387 Pseudogene Detail

Summary

• Symbol
  Gm47387
• Name
  predicted gene, 47387

• Feature Type
  pseudogene
• IDs
  MGI:6096307
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:63809611-63809975 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096307	pseudogene	Chr13:63809611-63809975 (+)
129S1/SvImJ	ENSMUSG00200017365	pseudogene	Chr13:59926434-59926798 (+)
A/J	ENSMUSG00195045851	pseudogene	Chr13:60087590-60087954 (+)
AKR/J	ENSMUSG00220043213	pseudogene	Chr13:59160187-59160551 (+)
BALB/cJ	ENSMUSG00180026413	pseudogene	Chr13:60394632-60394996 (+)
C3H/HeJ	ENSMUSG00175043373	pseudogene	Chr13:60218092-60218456 (+)
C57BL/6NJ	ENSMUSG00215016382	pseudogene	Chr13:60220576-60220940 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012043	pseudogene	Chr13:60600675-60601039 (+)
CBA/J	ENSMUSG00210009264	pseudogene	Chr13:60417534-60417898 (+)
DBA/2J	ENSMUSG00185010125	pseudogene	Chr13:61256597-61256961 (+)
FVB/NJ	ENSMUSG00205043639	pseudogene	Chr13:59393356-59393720 (+)
JF1/MsJ	ENSUMUG00000033487	pseudogene	Chr13:60878340-60878704 (+)
LP/J	ENSMUSG00230035271	pseudogene	Chr13:70602558-70602922 (+)
NOD/ShiLtJ	ENSMUSG00190033188	pseudogene	Chr13:60165928-60166292 (+)
NZO/HlLtJ	ENSMUSG00225047663	pseudogene	Chr13:64317398-64317762 (+)
PWK/PhJ	ENSLUMG00010025110	pseudogene	Chr13:59715135-59715499 (+)
SPRET/EiJ	ENSMSPG00010042946	pseudogene	Chr13:59929546-59929910 (+)
WSB/EiJ	ENSIUOG00005026508	pseudogene	Chr13:58887330-58887694 (+)

Homology

• Gene Tree
  Gm47387
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113700 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113700	Ensembl Gene Model | MGI Sequence Detail	365	C57BL/6J
transcript	ENSMUST00000221930	Ensembl | MGI Sequence Detail	365	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;