Gm47369 Pseudogene Detail

Summary

• Symbol
  Gm47369
• Name
  predicted gene, 47369

• Feature Type
  pseudogene
• IDs
  MGI:6096279
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:41731177-41731501 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096279	pseudogene	Chr12:41731177-41731501 (+)
129S1/SvImJ	ENSMUSG00200012171	pseudogene	Chr12:33612647-33612971 (+)
A/J	ENSMUSG00195019535	pseudogene	Chr12:36291527-36291851 (+)
AKR/J	ENSMUSG00220005405	pseudogene	Chr12:34285067-34285391 (+)
BALB/cJ	ENSMUSG00180003720	pseudogene	Chr12:35278701-35279025 (+)
C3H/HeJ	ENSMUSG00175017791	pseudogene	Chr12:38331866-38332190 (+)
C57BL/6NJ	ENSMUSG00215013985	pseudogene	Chr12:34666578-34666902 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003722	pseudogene	Chr12:35030627-35030952 (+)
CBA/J	ENSMUSG00210016251	pseudogene	Chr12:34810927-34811251 (+)
DBA/2J	ENSMUSG00185020518	pseudogene	Chr12:36823138-36823462 (+)
FVB/NJ	ENSMUSG00205001430	pseudogene	Chr12:34674218-34674542 (+)
JF1/MsJ	ENSUMUG00000003886	pseudogene	Chr12:41040150-41040475 (+)
LP/J	ENSMUSG00230010456	pseudogene	Chr12:43777705-43778029 (+)
NOD/ShiLtJ	ENSMUSG00190003669	pseudogene	Chr12:33826077-33826401 (+)
NZO/HlLtJ	ENSMUSG00225031462	pseudogene	Chr12:45996487-45996811 (+)
PWK/PhJ	ENSLUMG00010012601	pseudogene	Chr12:35167873-35168198 (+)
SPRET/EiJ	ENSMSPG00010001976	pseudogene	Chr12:36092358-36092689 (+)
WSB/EiJ	ENSIUOG00005001467	pseudogene	Chr12:34625314-34625638 (+)

Homology

• Gene Tree
  Gm47369
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113438 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113438	Ensembl Gene Model | MGI Sequence Detail	325	C57BL/6J
transcript	ENSMUST00000221651	Ensembl | MGI Sequence Detail	325	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;