Gm47340 Pseudogene Detail

Summary

• Symbol
  Gm47340
• Name
  predicted gene, 47340

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:6096233
  NCBI Gene: 115487471
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:109975600-109976030 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096233	pseudogene	Chr10:109965853-110043578 (-)
129S1/SvImJ	ENSMUSG00200010858	pseudogene	Chr10:106389803-106390233 (-)
A/J	ENSMUSG00195008407	pseudogene	Chr10:106809997-106810427 (-)
AKR/J	ENSMUSG00220025395	pseudogene	Chr10:106378645-106379075 (-)
BALB/cJ	ENSMUSG00180023985	pseudogene	Chr10:106822920-106823350 (-)
C3H/HeJ	ENSMUSG00175015951	pseudogene	Chr10:106753375-106753805 (-)
C57BL/6NJ	ENSMUSG00215012816	pseudogene	Chr10:106475468-106475898 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011561	pseudogene	Chr10:105873364-105873795 (-)
CBA/J	ENSMUSG00210011663	pseudogene	Chr10:106624740-106625170 (-)
DBA/2J	ENSMUSG00185025175	pseudogene	Chr10:106746776-106747206 (-)
FVB/NJ	ENSMUSG00205011601	pseudogene	Chr10:106255025-106255455 (-)
JF1/MsJ	ENSUMUG00000010574	pseudogene	Chr10:108092487-108092915 (-)
LP/J	ENSMUSG00230013165	pseudogene	Chr10:108699373-108699803 (-)
NOD/ShiLtJ	ENSMUSG00190020805	pseudogene	Chr10:106856156-106856586 (-)
NZO/HlLtJ	ENSMUSG00225017764	pseudogene	Chr10:112955538-112955968 (-)
PWK/PhJ	ENSLUMG00010014348	pseudogene	Chr10:106469244-106469672 (-)
SPRET/EiJ	ENSMSPG00010005580	pseudogene	Chr10:108320468-108320895 (-)
WSB/EiJ	ENSIUOG00005010668	pseudogene	Chr10:106539936-106540363 (-)

Homology

• Gene Tree
  Gm47340
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112595 (Evidence)
• NCBI Gene
  115487471

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112595	Ensembl Gene Model | MGI Sequence Detail	431	C57BL/6J
transcript	ENSMUST00000218767	Ensembl | MGI Sequence Detail	431	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;