Gm47330 Pseudogene Detail

Summary

• Symbol
  Gm47330
• Name
  predicted gene, 47330

• Feature Type
  pseudogene
• IDs
  MGI:6096218
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:118726268-118726793 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096218	pseudogene	Chr13:118726268-118726793 (+)
129S1/SvImJ	ENSMUSG00200003763	pseudogene	Chr13:113208113-113208638 (+)
A/J	ENSMUSG00195001010	pseudogene	Chr13:113702934-113703449 (+)
AKR/J	ENSMUSG00220012792	pseudogene	Chr13:112152831-112153346 (+)
BALB/cJ	ENSMUSG00180010910	pseudogene	Chr13:114304704-114305219 (+)
C3H/HeJ	ENSMUSG00175002335	pseudogene	Chr13:114379675-114380200 (+)
C57BL/6NJ	ENSMUSG00215000927	pseudogene	Chr13:114389288-114389813 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002640	pseudogene	Chr13:113448861-113449386 (+)
CBA/J	ENSMUSG00210017260	pseudogene	Chr13:113704721-113705246 (+)
DBA/2J	ENSMUSG00185029581	pseudogene	Chr13:117472593-117473118 (+)
FVB/NJ	ENSMUSG00205001338	pseudogene	Chr13:113140658-113141173 (+)
JF1/MsJ	ENSUMUG00000017579	pseudogene	Chr13:116919472-116919997 (+)
LP/J	ENSMUSG00230011825	pseudogene	Chr13:127670733-127671258 (+)
NOD/ShiLtJ	ENSMUSG00190009692	pseudogene	Chr13:114023695-114024219 (+)
NZO/HlLtJ	ENSMUSG00225031127	pseudogene	Chr13:119821861-119822386 (+)
PWK/PhJ	ENSLUMG00010008074	pseudogene	Chr13:113003216-113003741 (+)
SPRET/EiJ	ENSMSPG00010007053	pseudogene	Chr13:114884521-114885046 (+)
WSB/EiJ	ENSIUOG00005013158	pseudogene	Chr13:113158908-113159423 (+)

Homology

• Gene Tree
  Gm47330
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114485 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114485	Ensembl Gene Model | MGI Sequence Detail	526	C57BL/6J
transcript	ENSMUST00000225198	Ensembl | MGI Sequence Detail	526	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;