Gm47272 Gene Detail

Summary

• Symbol
  Gm47272
• Name
  predicted gene, 47272

• Feature Type
  lncRNA gene
• IDs
  MGI:6096111
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:80865394-80881706 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  502 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096111	lncRNA gene	Chr18:80865394-80881706 (+)
129S1/SvImJ	ENSMUSG00200029165	lncRNA gene	Chr18:78070602-78086958 (+)
A/J	ENSMUSG00195004900	lncRNA gene	Chr18:78167819-78184634 (+)
AKR/J	ENSMUSG00220018126	lncRNA gene	Chr18:78099537-78115742 (+)
BALB/cJ	ENSMUSG00180013878	lncRNA gene	Chr18:78738020-78754836 (+)
C3H/HeJ	ENSMUSG00175013376	lncRNA gene	Chr18:78282799-78299039 (+)
C57BL/6NJ	ENSMUSG00215030610	lncRNA gene	Chr18:77645011-77661259 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029290	lncRNA gene	Chr18:77194284-77210559 (+)
CBA/J	ENSMUSG00210037003	lncRNA gene	Chr18:78233340-78249580 (+)
DBA/2J	ENSMUSG00185011412	lncRNA gene	Chr18:78138605-78154849 (+)
FVB/NJ	ENSMUSG00205017440	lncRNA gene	Chr18:77547510-77563745 (+)
JF1/MsJ	ENSUMUG00000038483	lncRNA gene	Chr18:78037040-78053339 (+)
LP/J	ENSMUSG00230013629	lncRNA gene	Chr18:80176872-80193228 (+)
NOD/ShiLtJ	ENSMUSG00190022665	lncRNA gene	Chr18:77940170-77956985 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010007117	lncRNA gene	Chr18:78427518-78443722 (+)
SPRET/EiJ	ENSMSPG00010009940	lncRNA gene	Chr18:78787745-78806047 (+)
WSB/EiJ	ENSIUOG00005008007	lncRNA gene	Chr18:77598405-77614677 (+)

Homology

• Gene Tree
  Gm47272
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114891 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114891	Ensembl Gene Model | MGI Sequence Detail	16313	C57BL/6J
transcript	ENSMUST00000225900	Ensembl | MGI Sequence Detail	584	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;