Gm47271 Gene Detail

Summary

• Symbol
  Gm47271
• Name
  predicted gene, 47271

• Feature Type
  lncRNA gene
• IDs
  MGI:6096109
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:58874982-58941139 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1634 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096109	lncRNA gene	Chr9:58874982-58941139 (+)
129S1/SvImJ	ENSMUSG00200035832	lncRNA gene	Chr9:56006092-56060301 (+)
A/J	ENSMUSG00195042264	lncRNA gene	Chr9:55713229-55767435 (+)
AKR/J	ENSMUSG00220031137	lncRNA gene	Chr9:55845887-55900503 (+)
BALB/cJ	ENSMUSG00180019750	lncRNA gene	Chr9:55827190-55881794 (+)
C3H/HeJ	ENSMUSG00175022452	lncRNA gene	Chr9:55839922-55894130 (+)
C57BL/6NJ	ENSMUSG00215032711	lncRNA gene	Chr9:55820513-55875120 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021333	lncRNA gene	Chr9:55739465-55794976 (+)
CBA/J	ENSMUSG00210041339	lncRNA gene	Chr9:55946927-56001074 (+)
DBA/2J	ENSMUSG00185043468	lncRNA gene	Chr9:55966732-56020940 (+)
FVB/NJ	ENSMUSG00205042580	lncRNA gene	Chr9:56269107-56323723 (+)
JF1/MsJ	ENSUMUG00000050419	lncRNA gene	Chr9:55986956-56042636 (+)
LP/J	ENSMUSG00230039496	lncRNA gene	Chr9:56205756-56259957 (+)
NOD/ShiLtJ	ENSMUSG00190046668	lncRNA gene	Chr9:56030225-56084837 (+)
NZO/HlLtJ	ENSMUSG00225028643	lncRNA gene	Chr9:56247256-56301879 (+)
PWK/PhJ	ENSLUMG00010040899	lncRNA gene	Chr9:55941918-55997552 (+)
SPRET/EiJ	ENSMSPG00010029067	lncRNA gene	Chr9:56973508-57029446 (+)
WSB/EiJ	ENSIUOG00005041296	lncRNA gene	Chr9:55441715-55495974 (+)

Homology

• Gene Tree
  Gm47271
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000111846 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111846	Ensembl Gene Model | MGI Sequence Detail	66158	C57BL/6J
transcript	ENSMUST00000330922	Ensembl | MGI Sequence Detail	539	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;