Gm47257 Gene Detail

Summary

• Symbol
  Gm47257
• Name
  predicted gene, 47257

• Feature Type
  lncRNA gene
• IDs
  MGI:6096087
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:62437801-62439907 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096087	lncRNA gene	Chr10:62437801-62439907 (+)
129S1/SvImJ	ENSMUSG00200029231	lncRNA gene	Chr10:59110897-59112675 (+)
A/J	ENSMUSG00195028761	lncRNA gene	Chr10:59418242-59420020 (+)
AKR/J	ENSMUSG00220041938	lncRNA gene	Chr10:59111568-59113346 (+)
BALB/cJ	ENSMUSG00180027494	lncRNA gene	Chr10:59460539-59462317 (+)
C3H/HeJ	ENSMUSG00175027144	lncRNA gene	Chr10:59318110-59319888 (+)
C57BL/6NJ	ENSMUSG00215032943	lncRNA gene	Chr10:59058651-59060429 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030429	lncRNA gene	Chr10:59115940-59117719 (+)
CBA/J	ENSMUSG00210038503	lncRNA gene	Chr10:59196408-59198186 (+)
DBA/2J	ENSMUSG00185043544	lncRNA gene	Chr10:59537975-59539753 (+)
FVB/NJ	ENSMUSG00205038061	lncRNA gene	Chr10:59211610-59213388 (+)
JF1/MsJ	ENSUMUG00000023548	lncRNA gene	Chr10:60782817-60784596 (+)
LP/J	ENSMUSG00230019551	lncRNA gene	Chr10:61340907-61342685 (+)
NOD/ShiLtJ	ENSMUSG00190040025	lncRNA gene	Chr10:59523613-59525391 (+)
NZO/HlLtJ	ENSMUSG00225045678	lncRNA gene	Chr10:65621918-65623696 (+)
PWK/PhJ	ENSLUMG00010024606	lncRNA gene	Chr10:59170756-59172535 (+)
SPRET/EiJ	ENSMSPG00010023986	lncRNA gene	Chr10:60727420-60729189 (+)
WSB/EiJ	ENSIUOG00005041589	lncRNA gene	Chr10:59093014-59094792 (+)

Homology

• Gene Tree
  Gm47257
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112347 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112347	Ensembl Gene Model | MGI Sequence Detail	2107	C57BL/6J
transcript	ENSMUST00000218594	Ensembl | MGI Sequence Detail	2107	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47257:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93723	Chr10:62438110-62438147 (+)	328 bp
Tssr93724	Chr10:62438148-62438171 (+)	359 bp