Gm47249 Gene Detail

Summary

• Symbol
  Gm47249
• Name
  predicted gene, 47249

• Feature Type
  lncRNA gene
• IDs
  MGI:6096075
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:65359925-65362717 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096075	lncRNA gene	Chr13:65359925-65362717 (+)
129S1/SvImJ	ENSMUSG00200014315	lncRNA gene	Chr13:61467289-61469977 (+)
A/J	ENSMUSG00195030943	lncRNA gene	Chr13:61630635-61633283 (+)
AKR/J	ENSMUSG00220037074	lncRNA gene	Chr13:60712514-60715200 (+)
BALB/cJ	ENSMUSG00180025369	lncRNA gene	Chr13:61930099-61932745 (+)
C3H/HeJ	ENSMUSG00175008349	lncRNA gene	Chr13:61757723-61760374 (+)
C57BL/6NJ	ENSMUSG00215012069	lncRNA gene	Chr13:61771668-61774466 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012039	lncRNA gene	Chr13:62117964-62120642 (+)
CBA/J	ENSMUSG00210009222	lncRNA gene	Chr13:61957165-61959822 (+)
DBA/2J	ENSMUSG00185008993	lncRNA gene	Chr13:62788021-62790647 (+)
FVB/NJ	ENSMUSG00205029479	lncRNA gene	Chr13:60940044-60942690 (+)
JF1/MsJ	ENSUMUG00000034103	lncRNA gene	Chr13:62430332-62433155 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190039597	lncRNA gene	Chr13:61697380-61699994 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010013343	lncRNA gene	Chr13:61241284-61243988 (+)
SPRET/EiJ	ENSMSPG00010031113	lncRNA gene	Chr13:61502732-61505357 (+)
WSB/EiJ	ENSIUOG00005023286	lncRNA gene	Chr13:60408597-60411242 (+)

Homology

• Gene Tree
  Gm47249
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000113500 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113500	Ensembl Gene Model | MGI Sequence Detail	2793	C57BL/6J
transcript	ENSMUST00000220741	Ensembl | MGI Sequence Detail	444	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;