Gm47225 Pseudogene Detail

Summary

• Symbol
  Gm47225
• Name
  predicted gene, 47225

• Feature Type
  pseudogene
• IDs
  MGI:6096038
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:103729399-103729667 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  222 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096038	pseudogene	Chr10:103729399-103729667 (+)
129S1/SvImJ	ENSMUSG00200020547	pseudogene	Chr10:100205721-100205989 (+)
A/J	ENSMUSG00195017488	pseudogene	Chr10:100654500-100654755 (+)
AKR/J	ENSMUSG00220025604	pseudogene	Chr10:100224683-100224951 (+)
BALB/cJ	ENSMUSG00180009722	pseudogene	Chr10:100661672-100661927 (+)
C3H/HeJ	ENSMUSG00175006110	pseudogene	Chr10:100524033-100524301 (+)
C57BL/6NJ	ENSMUSG00215007223	pseudogene	Chr10:100249313-100249581 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006250	pseudogene	Chr10:99784814-99785069 (+)
CBA/J	ENSMUSG00210023044	pseudogene	Chr10:100415008-100415276 (+)
DBA/2J	ENSMUSG00185018888	pseudogene	Chr10:100603824-100604079 (+)
FVB/NJ	ENSMUSG00205003629	pseudogene	Chr10:100095887-100096155 (+)
JF1/MsJ	ENSUMUG00000010453	pseudogene	Chr10:102040138-102040393 (+)
LP/J	ENSMUSG00230013627	pseudogene	Chr10:102503094-102503362 (+)
NOD/ShiLtJ	ENSMUSG00190027973	pseudogene	Chr10:100707515-100707783 (+)
NZO/HlLtJ	ENSMUSG00225040989	pseudogene	Chr10:106754587-106754855 (+)
PWK/PhJ	ENSLUMG00010005928	pseudogene	Chr10:100285893-100286148 (+)
SPRET/EiJ	ENSMSPG00010005873	pseudogene	Chr10:102081813-102082078 (+)
WSB/EiJ	ENSIUOG00005013339	pseudogene	Chr10:100362894-100363159 (+)

Homology

• Gene Tree
  Gm47225
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112570 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112570	Ensembl Gene Model | MGI Sequence Detail	269	C57BL/6J
transcript	ENSMUST00000220325	Ensembl | MGI Sequence Detail	269	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;