Gm47200 Gene Detail

Summary

• Symbol
  Gm47200
• Name
  predicted gene, 47200

• Feature Type
  lncRNA gene
• IDs
  MGI:6095997
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:127168260-127206275 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  977 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6095997	lncRNA gene	Chr10:127168260-127206275 (+)
129S1/SvImJ	ENSMUSG00200013460	lncRNA gene	Chr10:123521236-123559248 (+)
A/J	ENSMUSG00195017120	lncRNA gene	Chr10:123985293-124023131 (+)
AKR/J	ENSMUSG00220006598	lncRNA gene	Chr10:123589852-123627873 (+)
BALB/cJ	ENSMUSG00180011497	lncRNA gene	Chr10:123976357-124014194 (+)
C3H/HeJ	ENSMUSG00175006264	lncRNA gene	Chr10:123974989-124013159 (+)
C57BL/6NJ	ENSMUSG00215023769	lncRNA gene	Chr10:123586445-123624466 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042404	lncRNA gene	Chr10:122954269-122996857 (+)
CBA/J	ENSMUSG00210009277	lncRNA gene	Chr10:123799180-123837348 (+)
DBA/2J	ENSMUSG00185027293	lncRNA gene	Chr10:123951378-123989380 (+)
FVB/NJ	ENSMUSG00205024484	lncRNA gene	Chr10:123195920-123233756 (+)
JF1/MsJ	ENSUMUG00000046907	lncRNA gene	Chr10:125246762-125284591 (+)
LP/J	ENSMUSG00230033964	lncRNA gene	Chr10:125868559-125906556 (+)
NOD/ShiLtJ	ENSMUSG00190016630	lncRNA gene	Chr10:124018351-124056177 (+)
NZO/HlLtJ	ENSMUSG00225037677	lncRNA gene	Chr10:130069113-130107139 (+)
PWK/PhJ	ENSLUMG00010010825	lncRNA gene	Chr10:123706932-123744745 (+)
SPRET/EiJ	ENSMSPG00010039146	lncRNA gene	Chr10:125657051-125698596 (+)
WSB/EiJ	ENSIUOG00005009213	lncRNA gene	Chr10:123585652-123623468 (+)

Homology

• Gene Tree
  Gm47200
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  11
• Gene trapped
  11
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112426 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112426	Ensembl Gene Model | MGI Sequence Detail	38016	C57BL/6J
transcript	ENSMUST00000219640	Ensembl | MGI Sequence Detail	622	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm47200:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3393	Chr10:127204815-127204819 (+)	36,557 bp