Gm47176 Gene Detail

Summary

• Symbol
  Gm47176
• Name
  predicted gene, 47176

• Feature Type
  lncRNA gene
• IDs
  MGI:6095960
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:56447189-56447516 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6095960	lncRNA gene	Chr9:56447189-56447516 (+)
129S1/SvImJ	ENSMUSG00200036091	lncRNA gene	Chr9:53561931-53562258 (+)
A/J	ENSMUSG00195042763	lncRNA gene	Chr9:53260531-53260858 (+)
AKR/J	ENSMUSG00220030952	lncRNA gene	Chr9:53397763-53398090 (+)
BALB/cJ	ENSMUSG00180020335	lncRNA gene	Chr9:53386437-53386764 (+)
C3H/HeJ	ENSMUSG00175022024	lncRNA gene	Chr9:53387408-53387735 (+)
C57BL/6NJ	ENSMUSG00215034335	lncRNA gene	Chr9:53379793-53380120 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021244	lncRNA gene	Chr9:53277981-53278308 (+)
CBA/J	ENSMUSG00210043657	lncRNA gene	Chr9:53488991-53489318 (+)
DBA/2J	ENSMUSG00185044221	lncRNA gene	Chr9:53517941-53518268 (+)
FVB/NJ	ENSMUSG00205041872	lncRNA gene	Chr9:53830416-53830743 (+)
JF1/MsJ	ENSUMUG00000051486	lncRNA gene	Chr9:53538266-53538591 (+)
LP/J	ENSMUSG00230039237	lncRNA gene	Chr9:53761862-53762189 (+)
NOD/ShiLtJ	ENSMUSG00190046065	lncRNA gene	Chr9:53585805-53586132 (+)
NZO/HlLtJ	ENSMUSG00225028646	lncRNA gene	Chr9:53799011-53799338 (+)
PWK/PhJ	ENSLUMG00010038991	lncRNA gene	Chr9:53501124-53501449 (+)
SPRET/EiJ	ENSMSPG00010027600	lncRNA gene	Chr9:54531323-54531648 (+)
WSB/EiJ	ENSIUOG00005040618	lncRNA gene	Chr9:52994429-52994756 (+)

Homology

• Gene Tree
  Gm47176
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000110821 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110821	Ensembl Gene Model | MGI Sequence Detail	328	C57BL/6J
transcript	ENSMUST00000213911	Ensembl | MGI Sequence Detail	328	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;