Gm47172 Pseudogene Detail

Summary

• Symbol
  Gm47172
• Name
  predicted gene, 47172

• Feature Type
  pseudogene
• IDs
  MGI:6095953
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:28469552-28493881 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  629 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6095953	pseudogene	Chr13:28469552-28493881 (+)
129S1/SvImJ	ENSMUSG00200032667	pseudogene	Chr13:25628454-25652820 (+)
A/J	ENSMUSG00195040032	pseudogene	Chr13:24774961-24799340 (+)
AKR/J	ENSMUSG00220013481	pseudogene	Chr13:24586713-24611085 (+)
BALB/cJ	ENSMUSG00180025811	pseudogene	Chr13:25080502-25104874 (+)
C3H/HeJ	ENSMUSG00175035785	pseudogene	Chr13:25103244-25127613 (+)
C57BL/6NJ	ENSMUSG00215018150	pseudogene	Chr13:25235326-25259666 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010860	pseudogene	Chr13:25268453-25292631 (+)
CBA/J	ENSMUSG00210027568	pseudogene	Chr13:25046875-25071224 (+)
DBA/2J	ENSMUSG00185022139	pseudogene	Chr13:25862245-25886608 (+)
FVB/NJ	ENSMUSG00205034076	pseudogene	Chr13:24859375-24883735 (+)
JF1/MsJ	ENSUMUG00000017485	pseudogene	Chr13:25508919-25537039 (+)
LP/J	ENSMUSG00230021988	pseudogene	Chr13:35190682-35215039 (+)
NOD/ShiLtJ	ENSMUSG00190040985	pseudogene	Chr13:24844263-24868644 (+)
NZO/HlLtJ	ENSMUSG00225046360	pseudogene	Chr13:28969907-28994276 (+)
PWK/PhJ	ENSLUMG00010031308	pseudogene	Chr13:24306557-24330952 (+)
SPRET/EiJ	ENSMSPG00010026110	pseudogene	Chr13:24310162-24334006 (+)
WSB/EiJ	ENSIUOG00005016849	pseudogene	Chr13:24420807-24445084 (+)

Homology

• Gene Tree
  Gm47172
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113418 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113418	Ensembl Gene Model | MGI Sequence Detail	24330	C57BL/6J
transcript	ENSMUST00000222053	Ensembl | MGI Sequence Detail	321	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;