Gm47162 Gene Detail

Summary

• Symbol
  Gm47162
• Name
  predicted gene, 47162

• Feature Type
  lncRNA gene
• IDs
  MGI:6095937
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:123136149-123137048 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  27

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6095937	lncRNA gene	Chr9:123136149-123137048 (+)
129S1/SvImJ	ENSMUSG00200050733	lncRNA gene	Chr4:102953109-102980376 (+)
129S1/SvImJ	ENSMUSG00200032081	lncRNA gene	Chr9:120269895-120270794 (+)
A/J	ENSMUSG00195048317	lncRNA gene	Chr4:103496077-103523347 (+)
A/J	ENSMUSG00195029786	lncRNA gene	Chr9:119410001-119410900 (+)
AKR/J	ENSMUSG00220019478	lncRNA gene	Chr9:119876371-119877270 (+)
AKR/J	ENSMUSG00220012916	lncRNA gene	Chr4:102896993-102924293 (+)
BALB/cJ	ENSMUSG00180048570	lncRNA gene	Chr4:102333418-102360687 (+)
BALB/cJ	ENSMUSG00180031059	lncRNA gene	Chr9:119949781-119950680 (+)
C3H/HeJ	ENSMUSG00175044767	lncRNA gene	Chr4:103337867-103365132 (+)
C3H/HeJ	ENSMUSG00175020375	lncRNA gene	Chr9:120186167-120187066 (+)
C57BL/6NJ	ENSMUSG00215036728	lncRNA gene	Chr4:103233909-103261180 (+)
C57BL/6NJ	ENSMUSG00215037779	lncRNA gene	Chr9:120099938-120100837 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017368	lncRNA gene	Chr9:119762979-119763877 (+)
CAST/EiJ	ENSTCUG00005023206	lncRNA gene	Chr4:102452094-102481040 (+)
CBA/J	ENSMUSG00210053547	lncRNA gene	Chr4:102970897-102998158 (+)
CBA/J	ENSMUSG00210042092	lncRNA gene	Chr9:119904557-119905456 (+)
DBA/2J	ENSMUSG00185051162	lncRNA gene	Chr4:103681512-103708764 (+)
DBA/2J	ENSMUSG00185018219	lncRNA gene	Chr9:120240228-120241127 (+)
FVB/NJ	ENSMUSG00205016938	lncRNA gene	Chr4:101907731-101935004 (+)
FVB/NJ	ENSMUSG00205034223	lncRNA gene	Chr9:120076558-120077457 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230037795	lncRNA gene	Chr9:120410052-120410951 (+)
LP/J	ENSMUSG00230010020	lncRNA gene	Chr4:106989543-107016812 (+)
NOD/ShiLtJ	ENSMUSG00190049382	lncRNA gene	Chr4:102340678-102367942 (+)
NOD/ShiLtJ	ENSMUSG00190015320	lncRNA gene	Chr9:119847425-119848324 (+)
NZO/HlLtJ	ENSMUSG00225033371	lncRNA gene	Chr4:112100039-112127290 (+)
NZO/HlLtJ	ENSMUSG00225024017	lncRNA gene	Chr9:120665237-120666136 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm47162
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000111371 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111371	Ensembl Gene Model | MGI Sequence Detail	900	C57BL/6J
transcript	ENSMUST00000213385	Ensembl | MGI Sequence Detail	447	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;