Gm47128 Gene Detail

Summary

• Symbol
  Gm47128
• Name
  predicted gene, 47128

• Feature Type
  lncRNA gene
• IDs
  MGI:6095880
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:122251143-122252535 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6095880	lncRNA gene	Chr9:122251143-122252535 (+)
129S1/SvImJ	ENSMUSG00200032400	lncRNA gene	Chr9:119378040-119379280 (+)
A/J	ENSMUSG00195029627	lncRNA gene	Chr9:118524001-118525241 (+)
AKR/J	ENSMUSG00220020001	lncRNA gene	Chr9:118985539-118986779 (+)
BALB/cJ	ENSMUSG00180030721	lncRNA gene	Chr9:119061996-119063236 (+)
C3H/HeJ	ENSMUSG00175019328	lncRNA gene	Chr9:119300218-119301458 (+)
C57BL/6NJ	ENSMUSG00215036913	lncRNA gene	Chr9:119211281-119212521 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017681	lncRNA gene	Chr9:118898070-118899305 (+)
CBA/J	ENSMUSG00210043137	lncRNA gene	Chr9:119025221-119026461 (+)
DBA/2J	ENSMUSG00185018469	lncRNA gene	Chr9:119360871-119362111 (+)
FVB/NJ	ENSMUSG00205033845	lncRNA gene	Chr9:119190587-119191827 (+)
JF1/MsJ	ENSUMUG00000048597	lncRNA gene	Chr9:119172391-119173626 (+)
LP/J	ENSMUSG00230037914	lncRNA gene	Chr9:119518200-119519440 (+)
NOD/ShiLtJ	ENSMUSG00190015698	lncRNA gene	Chr9:118973350-118974590 (+)
NZO/HlLtJ	ENSMUSG00225023724	lncRNA gene	Chr9:119778564-119779804 (+)
PWK/PhJ	ENSLUMG00010039696	lncRNA gene	Chr9:119054665-119055903 (+)
SPRET/EiJ	ENSMSPG00010025485	lncRNA gene	Chr9:120773858-120775093 (+)
WSB/EiJ	ENSIUOG00005022405	lncRNA gene	Chr9:118397669-118398909 (+)

Homology

• Gene Tree
  Gm47128
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000111192 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111192	Ensembl Gene Model | MGI Sequence Detail	1393	C57BL/6J
transcript	ENSMUST00000378877	Ensembl | MGI Sequence Detail	1393	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47128:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87844	Chr9:122250367-122250372 (+)	-773 bp
Tssr87845	Chr9:122251185-122251193 (+)	46 bp