Gm47098 Pseudogene Detail

Summary

• Symbol
  Gm47098
• Name
  predicted gene, 47098

• Feature Type
  pseudogene
• IDs
  MGI:6095833
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:73111569-73111918 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6095833	pseudogene	Chr10:73111569-73111918 (+)
129S1/SvImJ	ENSMUSG00200017640	pseudogene	Chr10:69810455-69810804 (+)
A/J	ENSMUSG00195005827	pseudogene	Chr10:70123819-70124168 (+)
AKR/J	ENSMUSG00220029536	pseudogene	Chr10:69770127-69770476 (+)
BALB/cJ	ENSMUSG00180007753	pseudogene	Chr10:70138394-70138744 (+)
C3H/HeJ	ENSMUSG00175012740	pseudogene	Chr10:69989370-69989719 (+)
C57BL/6NJ	ENSMUSG00215004134	pseudogene	Chr10:69747327-69747676 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027879	pseudogene	Chr10:69651024-69651372 (+)
CBA/J	ENSMUSG00210009942	pseudogene	Chr10:69853167-69853516 (+)
DBA/2J	ENSMUSG00185020503	pseudogene	Chr10:70208336-70208685 (+)
FVB/NJ	ENSMUSG00205007840	pseudogene	Chr10:69942578-69942927 (+)
JF1/MsJ	ENSUMUG00000055623	pseudogene	Chr10:71384016-71384364 (+)
LP/J	ENSMUSG00230051385	pseudogene	Chr10:71978096-71978445 (+)
NOD/ShiLtJ	ENSMUSG00190007965	pseudogene	Chr10:70195443-70195788 (+)
NZO/HlLtJ	ENSMUSG00225048621	pseudogene	Chr10:76274477-76274826 (+)
PWK/PhJ	ENSLUMG00010007817	pseudogene	Chr10:69791851-69792199 (+)
SPRET/EiJ	ENSMSPG00010047636	pseudogene	Chr10:71525165-71525512 (+)
WSB/EiJ	ENSIUOG00005034104	pseudogene	Chr10:69768249-69768594 (+)

Homology

• Gene Tree
  Gm47098
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112838 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112838	Ensembl Gene Model | MGI Sequence Detail	350	C57BL/6J
transcript	ENSMUST00000220399	Ensembl | MGI Sequence Detail	350	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;