Gm47072 Pseudogene Detail

Summary

• Symbol
  Gm47072
• Name
  predicted gene, 47072

• Feature Type
  pseudogene
• IDs
  MGI:6095791
  NCBI Gene: 115488200
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:56175197-56178047 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6095791	pseudogene	Chr13:56175196-56178377 (-)
129S1/SvImJ	ENSMUSG00200017134	pseudogene	Chr13:53047916-53050566 (-)
A/J	ENSMUSG00195045701	pseudogene	Chr13:52513468-52516118 (-)
AKR/J	ENSMUSG00220045738	pseudogene	Chr13:52055411-52058262 (-)
BALB/cJ	ENSMUSG00180018092	pseudogene	Chr13:52759170-52761820 (-)
C3H/HeJ	ENSMUSG00175042833	pseudogene	Chr13:52545402-52548052 (-)
C57BL/6NJ	ENSMUSG00215041240	pseudogene	Chr13:52577454-52580305 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040218	pseudogene	Chr13:52964167-52966760 (-)
CBA/J	ENSMUSG00210043847	pseudogene	Chr13:52750376-52753026 (-)
DBA/2J	ENSMUSG00185018633	pseudogene	Chr13:53599238-53601888 (-)
FVB/NJ	ENSMUSG00205045229	pseudogene	Chr13:52402013-52404863 (-)
JF1/MsJ	ENSUMUG00000042501	pseudogene	Chr13:52986920-52989493 (-)
LP/J	ENSMUSG00230035257	pseudogene	Chr13:62947648-62950297 (-)
NOD/ShiLtJ	ENSMUSG00190035573	pseudogene	Chr13:52642153-52644803 (-)
NZO/HlLtJ	ENSMUSG00225035228	pseudogene	Chr13:56671020-56673670 (-)
PWK/PhJ	ENSLUMG00010025261	pseudogene	Chr13:51856347-51858919 (-)
SPRET/EiJ	ENSMSPG00010042433	pseudogene	Chr13:52283731-52286391 (-)
WSB/EiJ	ENSIUOG00005025687	pseudogene	Chr13:52070135-52072979 (-)

Homology

• Gene Tree
  Gm47072
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000114229 (Evidence)
• NCBI Gene
  115488200

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114229	Ensembl Gene Model | MGI Sequence Detail	2851	C57BL/6J
transcript	ENSMUST00000225745	Ensembl | MGI Sequence Detail	929	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;