Gm47066 Gene Detail

Summary

• Symbol
  Gm47066
• Name
  predicted gene, 47066

• Feature Type
  lncRNA gene
• IDs
  MGI:6095779
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:120619940-120623959 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  253 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6095779	lncRNA gene	Chr9:120619940-120623959 (+)
129S1/SvImJ	ENSMUSG00200032554	lncRNA gene	Chr9:117747238-117750134 (+)
A/J	ENSMUSG00195029296	lncRNA gene	Chr9:116922418-116925315 (+)
AKR/J	ENSMUSG00220020533	lncRNA gene	Chr9:117389811-117392709 (+)
BALB/cJ	ENSMUSG00180030256	lncRNA gene	Chr9:117459660-117462557 (+)
C3H/HeJ	ENSMUSG00175019450	lncRNA gene	Chr9:117702934-117705831 (+)
C57BL/6NJ	ENSMUSG00215034811	lncRNA gene	Chr9:117578286-117581182 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017051	lncRNA gene	Chr9:117319896-117322786 (+)
CBA/J	ENSMUSG00210042228	lncRNA gene	Chr9:117428621-117431519 (+)
DBA/2J	ENSMUSG00185017862	lncRNA gene	Chr9:117762853-117765751 (+)
FVB/NJ	ENSMUSG00205029444	lncRNA gene	Chr9:117591151-117594048 (+)
JF1/MsJ	ENSUMUG00000050010	lncRNA gene	Chr9:117602672-117605564 (+)
LP/J	ENSMUSG00230037929	lncRNA gene	Chr9:117875490-117878386 (+)
NOD/ShiLtJ	ENSMUSG00190015587	lncRNA gene	Chr9:117356598-117359494 (+)
NZO/HlLtJ	ENSMUSG00225023735	lncRNA gene	Chr9:118139821-118142717 (+)
PWK/PhJ	ENSLUMG00010037425	lncRNA gene	Chr9:117488280-117491166 (+)
SPRET/EiJ	ENSMSPG00010026730	lncRNA gene	Chr9:119186224-119188671 (+)
WSB/EiJ	ENSIUOG00005022795	lncRNA gene	Chr9:116801991-116804890 (+)

Homology

• Gene Tree
  Gm47066
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000111270 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111270	Ensembl Gene Model | MGI Sequence Detail	4020	C57BL/6J
transcript	ENSMUST00000216419	Ensembl | MGI Sequence Detail	1219	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;