Gm47064 Gene Detail

Summary

• Symbol
  Gm47064
• Name
  predicted gene, 47064

• Feature Type
  lncRNA gene
• IDs
  MGI:6095776
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:120571126-120580209 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  408 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6095776	lncRNA gene	Chr9:120571126-120580209 (-)
129S1/SvImJ	ENSMUSG00200032453	lncRNA gene	Chr9:117695608-117703161 (-)
A/J	ENSMUSG00195028242	lncRNA gene	Chr9:116870760-116878313 (-)
AKR/J	ENSMUSG00220019799	lncRNA gene	Chr9:117331975-117339676 (-)
BALB/cJ	ENSMUSG00180030088	lncRNA gene	Chr9:117407998-117415551 (-)
C3H/HeJ	ENSMUSG00175020145	lncRNA gene	Chr9:117651279-117658832 (-)
C57BL/6NJ	ENSMUSG00215033264	lncRNA gene	Chr9:117526660-117534213 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017084	lncRNA gene	Chr9:117268800-117276572 (-)
CBA/J	ENSMUSG00210040914	lncRNA gene	Chr9:117370778-117378478 (-)
DBA/2J	ENSMUSG00185017930	lncRNA gene	Chr9:117705013-117712714 (-)
FVB/NJ	ENSMUSG00205032110	lncRNA gene	Chr9:117539487-117547040 (-)
JF1/MsJ	ENSUMUG00000052022	lncRNA gene	Chr9:117553562-117561464 (-)
LP/J	ENSMUSG00230038344	lncRNA gene	Chr9:117823876-117831429 (-)
NOD/ShiLtJ	ENSMUSG00190015008	lncRNA gene	Chr9:117305036-117312589 (-)
NZO/HlLtJ	ENSMUSG00225023895	lncRNA gene	Chr9:118088200-118095753 (-)
PWK/PhJ	ENSLUMG00010038135	lncRNA gene	Chr9:117439163-117446886 (-)
SPRET/EiJ	ENSMSPG00010026238	lncRNA gene	Chr9:119136947-119144658 (-)
WSB/EiJ	ENSIUOG00005021994	lncRNA gene	Chr9:116744184-116751888 (-)

Homology

• Gene Tree
  Gm47064
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111831 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111831	Ensembl Gene Model | MGI Sequence Detail	9084	C57BL/6J
transcript	ENSMUST00000215385	Ensembl | MGI Sequence Detail	1373	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47064:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92029	Chr9:120572260-120572266 (-)	7,946 bp