Gm47040 Gene Detail

Summary

• Symbol
  Gm47040
• Name
  predicted gene, 47040

• Feature Type
  lncRNA gene
• IDs
  MGI:6095741
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:114595199-114598583 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6095741	lncRNA gene	Chr13:114595199-114598583 (+)
129S1/SvImJ	ENSMUSG00200032018	lncRNA gene	Chr13:109065800-109069186 (+)
A/J	ENSMUSG00195013824	lncRNA gene	Chr13:109554861-109558301 (+)
AKR/J	ENSMUSG00220031392	lncRNA gene	Chr13:108007555-108010939 (+)
BALB/cJ	ENSMUSG00180030137	lncRNA gene	Chr13:110151590-110154974 (+)
C3H/HeJ	ENSMUSG00175028018	lncRNA gene	Chr13:110229043-110232428 (+)
C57BL/6NJ	ENSMUSG00215027553	lncRNA gene	Chr13:110256590-110259975 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026346	lncRNA gene	Chr13:109292288-109295711 (+)
CBA/J	ENSMUSG00210010889	lncRNA gene	Chr13:109577091-109580476 (+)
DBA/2J	ENSMUSG00185030660	lncRNA gene	Chr13:113336168-113339554 (+)
FVB/NJ	ENSMUSG00205007330	lncRNA gene	Chr13:109006535-109009969 (+)
JF1/MsJ	ENSUMUG00000017753	lncRNA gene	Chr13:112782513-112785949 (+)
LP/J	ENSMUSG00230011655	lncRNA gene	Chr13:123534621-123538005 (+)
NOD/ShiLtJ	ENSMUSG00190020497	lncRNA gene	Chr13:109849731-109853116 (+)
NZO/HlLtJ	ENSMUSG00225031621	lncRNA gene	Chr13:115702115-115705549 (+)
PWK/PhJ	ENSLUMG00010010261	lncRNA gene	Chr13:108832201-108835613 (+)
SPRET/EiJ	ENSMSPG00010017881	lncRNA gene	Chr13:110563212-110566671 (+)
WSB/EiJ	ENSIUOG00005009474	lncRNA gene	Chr13:109013349-109016764 (+)

Homology

• Gene Tree
  Gm47040
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114935 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114935	Ensembl Gene Model | MGI Sequence Detail	3385	C57BL/6J
transcript	ENSMUST00000225706	Ensembl | MGI Sequence Detail	605	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;