Gm47019 Pseudogene Detail

Summary

• Symbol
  Gm47019
• Name
  predicted gene, 47019

• Feature Type
  pseudogene
• IDs
  MGI:6095705
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:28256044-28274857 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  676 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6095705	pseudogene	Chr13:28256044-28274857 (+)
129S1/SvImJ	ENSMUSG00200031553	pseudogene	Chr13:25414653-25433613 (+)
A/J	ENSMUSG00195040542	pseudogene	Chr13:24561134-24580091 (+)
AKR/J	ENSMUSG00220013332	pseudogene	Chr13:24372855-24391812 (+)
BALB/cJ	ENSMUSG00180025944	pseudogene	Chr13:24866668-24885634 (+)
C3H/HeJ	ENSMUSG00175036078	pseudogene	Chr13:24889417-24908380 (+)
C57BL/6NJ	ENSMUSG00215018536	pseudogene	Chr13:25021503-25040463 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010826	pseudogene	Chr13:25050806-25063122 (+)
CBA/J	ENSMUSG00210027989	pseudogene	Chr13:24833130-24852084 (+)
DBA/2J	ENSMUSG00185022190	pseudogene	Chr13:25648422-25667385 (+)
FVB/NJ	ENSMUSG00205030871	pseudogene	Chr13:24645538-24664492 (+)
JF1/MsJ	ENSUMUG00000025708	pseudogene	Chr13:25279052-25291257 (+)
LP/J	ENSMUSG00230021943	pseudogene	Chr13:34976878-34995838 (+)
NOD/ShiLtJ	ENSMUSG00190042616	pseudogene	Chr13:24630441-24649395 (+)
NZO/HlLtJ	ENSMUSG00225046330	pseudogene	Chr13:28756081-28775047 (+)
PWK/PhJ	ENSLUMG00010030740	pseudogene	Chr13:24090149-24102459 (+)
SPRET/EiJ	ENSMSPG00010027271	pseudogene	Chr13:24118004-24132185 (+)
WSB/EiJ	ENSIUOG00005016774	pseudogene	Chr13:24214612-24233493 (+)

Homology

• Gene Tree
  Gm47019
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114182 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114182	Ensembl Gene Model | MGI Sequence Detail	18814	C57BL/6J
transcript	ENSMUST00000223339	Ensembl | MGI Sequence Detail	574	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;