Gm46961 Gene Detail

Summary

• Symbol
  Gm46961
• Name
  predicted gene, 46961

• Feature Type
  lncRNA gene
• IDs
  MGI:5826598
  NCBI Gene: 108169148
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:70690063-70695860 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  308 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826598	lncRNA gene	Chr6:70690050-70695886 (-)
129S1/SvImJ	ENSMUSG00200012192	lncRNA gene	Chr6:67593107-67598947 (-)
A/J	ENSMUSG00195044054	lncRNA gene	Chr6:67355087-67360920 (-)
AKR/J	ENSMUSG00220046052	lncRNA gene	Chr6:66303714-66309559 (-)
BALB/cJ	ENSMUSG00180041985	lncRNA gene	Chr6:67710151-67715990 (-)
C3H/HeJ	ENSMUSG00175014800	lncRNA gene	Chr6:109737000-109742831 (+)
C57BL/6NJ	ENSMUSG00215044847	lncRNA gene	Chr6:67682786-67688630 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035948	lncRNA gene	Chr6:67836053-67841913 (-)
CBA/J	ENSMUSG00210047343	lncRNA gene	Chr6:67507948-67513785 (-)
DBA/2J	ENSMUSG00185043902	lncRNA gene	Chr6:68067982-68073821 (-)
FVB/NJ	ENSMUSG00205041920	lncRNA gene	Chr6:66805626-66811461 (-)
JF1/MsJ	ENSUMUG00000039846	lncRNA gene	Chr6:67102645-67108470 (-)
LP/J	ENSMUSG00230024747	lncRNA gene	Chr6:69188207-69194042 (-)
NOD/ShiLtJ	ENSMUSG00190038062	lncRNA gene	Chr6:67043049-67048898 (-)
NZO/HlLtJ	ENSMUSG00225019978	lncRNA gene	Chr6:71162103-71167940 (-)
PWK/PhJ	ENSLUMG00010020820	lncRNA gene	Chr6:66475039-66480843 (-)
SPRET/EiJ	ENSMSPG00010029404	lncRNA gene	Chr6:68389278-68395139 (-)
WSB/EiJ	ENSIUOG00005023576	lncRNA gene	Chr6:68060384-68066214 (-)

Homology

• Gene Tree
  Gm46961
  

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000119951 (Evidence)
• NCBI Gene
  108169148

Representative Sequences			Length	Strain/Species
genomic	108169148	NCBI Gene Model | MGI Sequence Detail	5798	C57BL/6J
transcript	XR_001785272	RefSeq | MGI Sequence Detail	654	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46961:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61320	Chr6:70695849-70695873 (-)	-1 bp