Gm46851 Gene Detail

Summary

• Symbol
  Gm46851
• Name
  predicted gene, 46851

• Feature Type
  lncRNA gene
• IDs
  MGI:5826488
  NCBI Gene: 108168938
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:43336259-43340135 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  249 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826488	lncRNA gene	Chr4:43336254-43340155 (-)
129S1/SvImJ	ENSMUSG00200005668	lncRNA gene	Chr4:39371123-39374974 (-)
A/J	ENSMUSG00195003724	lncRNA gene	Chr4:39843202-39847053 (-)
AKR/J	ENSMUSG00220036494	lncRNA gene	Chr4:39527349-39531200 (-)
BALB/cJ	ENSMUSG00180026619	lncRNA gene	Chr4:39429960-39433811 (-)
C3H/HeJ	ENSMUSG00175023909	lncRNA gene	Chr4:39574291-39578142 (-)
C57BL/6NJ	ENSMUSG00215030906	lncRNA gene	Chr4:39356566-39360464 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004795	lncRNA gene	Chr4:39617345-39621205 (-)
CBA/J	ENSMUSG00210008301	lncRNA gene	Chr4:39260304-39264202 (-)
DBA/2J	ENSMUSG00185006694	lncRNA gene	Chr4:39623737-39627635 (-)
FVB/NJ	ENSMUSG00205027830	lncRNA gene	Chr4:38866996-38870894 (-)
JF1/MsJ	ENSUMUG00000028771	lncRNA gene	Chr4:39868630-39872635 (-)
LP/J	ENSMUSG00230042544	lncRNA gene	Chr4:43184430-43188330 (-)
NOD/ShiLtJ	ENSMUSG00190006274	lncRNA gene	Chr4:39485682-39489533 (-)
NZO/HlLtJ	ENSMUSG00225007293	lncRNA gene	Chr4:47771740-47775638 (-)
PWK/PhJ	ENSLUMG00010006785	lncRNA gene	Chr4:38871021-38874889 (-)
SPRET/EiJ	ENSMSPG00010025499	lncRNA gene	Chr4:39801856-39805715 (-)
WSB/EiJ	ENSIUOG00005049834	lncRNA gene	Chr4:39243205-39247056 (-)

Homology

• Gene Tree
  Gm46851
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000120824 (Evidence)
• NCBI Gene
  108168938

Representative Sequences			Length	Strain/Species
genomic	108168938	NCBI Gene Model | MGI Sequence Detail	3877	C57BL/6J
transcript	NR_168620	RefSeq | MGI Sequence Detail	1586	ZRU/MplStud

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm46851:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr41403	Chr4:43340132-43340137 (-)	0 bp