Gm46781 Gene Detail

Summary

• Symbol
  Gm46781
• Name
  predicted gene, 46781

• Feature Type
  lncRNA gene
• IDs
  MGI:5826418
  NCBI Gene: 108168823
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr2:174444605-174455238 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  379 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826418	lncRNA gene	Chr2:174418480-174456196 (-)
129S1/SvImJ	ENSMUSG00200040566	lncRNA gene	Chr2:171383802-171395115 (-)
A/J	ENSMUSG00195026319	lncRNA gene	Chr2:171712423-171723738 (-)
AKR/J	ENSMUSG00220036711	lncRNA gene	Chr2:171005593-171016906 (-)
BALB/cJ	ENSMUSG00180040519	lncRNA gene	Chr2:171144257-171155571 (-)
C3H/HeJ	ENSMUSG00175044900	lncRNA gene	Chr2:171916430-171927756 (-)
C57BL/6NJ	ENSMUSG00215031603	lncRNA gene	Chr2:171343709-171355035 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009143	lncRNA gene	Chr2:170254012-170265230 (-)
CBA/J	ENSMUSG00210041706	lncRNA gene	Chr2:171826243-171837558 (-)
DBA/2J	ENSMUSG00185027418	lncRNA gene	Chr2:171540269-171551595 (-)
FVB/NJ	ENSMUSG00205025192	lncRNA gene	Chr2:170596619-170607918 (-)
JF1/MsJ	ENSUMUG00000044276	lncRNA gene	Chr2:171224339-171235722 (-)
LP/J	ENSMUSG00230014326	lncRNA gene	Chr2:173120052-173131365 (-)
NOD/ShiLtJ	ENSMUSG00190043371	lncRNA gene	Chr2:171217022-171228394 (-)
NZO/HlLtJ	ENSMUSG00225004277	lncRNA gene	Chr2:181112046-181123345 (-)
PWK/PhJ	ENSLUMG00010038924	lncRNA gene	Chr2:171121180-171132561 (-)
SPRET/EiJ	ENSMSPG00010004234	lncRNA gene	Chr2:173917855-173929318 (-)
WSB/EiJ	ENSIUOG00005026638	lncRNA gene	Chr2:170969516-170980918 (-)

Homology

• Gene Tree
  Gm46781
  

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  1

• Ensembl
  ENSMUSG00000119943 (Evidence)
• NCBI Gene
  108168823

Representative Sequences			Length	Strain/Species
genomic	108168823	NCBI Gene Model | MGI Sequence Detail	10634	C57BL/6J
transcript	XR_004940802	RefSeq | MGI Sequence Detail	2619	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46781:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28041	Chr2:174456165-174456177 (-)	-933 bp
Tssr28040	Chr2:174456138-174456163 (-)	-913 bp
Tssr28039	Chr2:174455880-174455906 (-)	-655 bp
Tssr28038	Chr2:174455836-174455853 (-)	-607 bp
Tssr28037	Chr2:174455820-174455827 (-)	-586 bp