Gm46732 Gene Detail

Summary

• Symbol
  Gm46732
• Name
  predicted gene, 46732

• Feature Type
  lncRNA gene
• IDs
  MGI:5826369
  NCBI Gene: 108168741
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:25246483-25248013 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826369	lncRNA gene	Chr2:25246388-25248018 (+)
129S1/SvImJ	ENSMUSG00200053076	lncRNA gene	Chr2:22230576-22232169 (+)
A/J	ENSMUSG00195050036	lncRNA gene	Chr2:22321091-22322684 (+)
AKR/J	ENSMUSG00220053626	lncRNA gene	Chr2:22438927-22440520 (+)
BALB/cJ	ENSMUSG00180054437	lncRNA gene	Chr2:22332206-22333799 (+)
C3H/HeJ	ENSMUSG00175054026	lncRNA gene	Chr2:22296365-22297958 (+)
C57BL/6NJ	ENSMUSG00215049304	lncRNA gene	Chr2:22355102-22356695 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053289	lncRNA gene	Chr2:22081057-22082654 (+)
CBA/J	ENSMUSG00210017826	lncRNA gene	Chr2:22335370-22336963 (+)
DBA/2J	ENSMUSG00185053240	lncRNA gene	Chr2:22235314-22236907 (+)
FVB/NJ	ENSMUSG00205051118	lncRNA gene	Chr2:22089197-22090790 (+)
JF1/MsJ	ENSUMUG00000056149	lncRNA gene	Chr2:22149318-22150925 (+)
LP/J	ENSMUSG00230046518	lncRNA gene	Chr2:24166565-24168158 (+)
NOD/ShiLtJ	ENSMUSG00190052832	lncRNA gene	Chr2:22326181-22327774 (+)
NZO/HlLtJ	ENSMUSG00225011566	lncRNA gene	Chr2:31916980-31918573 (+)
PWK/PhJ	ENSLUMG00010052780	lncRNA gene	Chr2:22246746-22248353 (+)
SPRET/EiJ	ENSMSPG00010047868	lncRNA gene	Chr2:22935159-22936774 (+)
WSB/EiJ	ENSIUOG00005052620	lncRNA gene	Chr2:22193445-22195038 (+)

Homology

• Gene Tree
  Gm46732
  

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000120059 (Evidence)
• NCBI Gene
  108168741

Representative Sequences			Length	Strain/Species
genomic	108168741	NCBI Gene Model | MGI Sequence Detail	1531	C57BL/6J
transcript	NR_166118	RefSeq | MGI Sequence Detail	1145	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46732:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16702	Chr2:25246459-25246488 (+)	-9 bp