Gm46652 Gene Detail

Summary

• Symbol
  Gm46652
• Name
  predicted gene, 46652

• Feature Type
  lncRNA gene
• IDs
  MGI:5826289
  NCBI Gene: 108168413
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:60599695-60614242 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  450 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826289	lncRNA gene	Chr19:60599668-60618399 (+)
129S1/SvImJ	ENSMUSG00200015426	lncRNA gene	Chr19:57307549-57322500 (+)
A/J	ENSMUSG00195002609	lncRNA gene	Chr19:57486183-57501133 (+)
AKR/J	ENSMUSG00220018205	lncRNA gene	Chr19:57238463-57253391 (+)
BALB/cJ	ENSMUSG00180020521	lncRNA gene	Chr19:57726668-57741598 (+)
C3H/HeJ	ENSMUSG00175023297	lncRNA gene	Chr19:57267599-57282533 (+)
C57BL/6NJ	ENSMUSG00215026526	lncRNA gene	Chr19:57348778-57363275 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015844	lncRNA gene	Chr19:56898097-56912758 (+)
CBA/J	ENSMUSG00210021314	lncRNA gene	Chr19:57347581-57362513 (+)
DBA/2J	ENSMUSG00185028574	lncRNA gene	Chr19:57843517-57858447 (+)
FVB/NJ	ENSMUSG00205003652	lncRNA gene	Chr19:56735475-56750117 (+)
JF1/MsJ	ENSUMUG00000040036	lncRNA gene	Chr19:58041589-58056084 (+)
LP/J	ENSMUSG00230028273	lncRNA gene	Chr19:58589837-58604784 (+)
NOD/ShiLtJ	ENSMUSG00190013856	lncRNA gene	Chr19:57273629-57288270 (+)
NZO/HlLtJ	ENSMUSG00225021207	lncRNA gene	Chr19:62214637-62229274 (+)
PWK/PhJ	ENSLUMG00010018931	lncRNA gene	Chr19:57079727-57094397 (+)
SPRET/EiJ	ENSMSPG00010003350	lncRNA gene	Chr19:56921707-56936483 (+)
WSB/EiJ	ENSIUOG00005025511	lncRNA gene	Chr19:56686642-56701287 (+)

Homology

• Gene Tree
  Gm46652
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2

• Ensembl
  ENSMUSG00000117790 (Evidence)
• NCBI Gene
  108168413

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117790	Ensembl Gene Model | MGI Sequence Detail	14548	C57BL/6J
transcript	ENSMUST00000360131	Ensembl | MGI Sequence Detail	801	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46652:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157357	Chr19:60599738-60599750 (+)	49 bp