Gm46641 Pseudogene Detail

Summary

• Symbol
  Gm46641
• Name
  predicted gene, 46641

• Feature Type
  pseudogene
• IDs
  MGI:5826278
  NCBI Gene: 108168401
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:9547297-9552238 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  323 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826278	pseudogene	Chr18:9547297-9552238 (+)
129S1/SvImJ	ENSMUSG00200025621	pseudogene	Chr18:6463487-6468431 (+)
A/J	ENSMUSG00195009306	pseudogene	Chr18:6664553-6669491 (+)
AKR/J	ENSMUSG00220019479	pseudogene	Chr18:6655732-6660670 (+)
BALB/cJ	ENSMUSG00180005602	pseudogene	Chr18:7104925-7109866 (+)
C3H/HeJ	ENSMUSG00175008175	pseudogene	Chr18:6640290-6645231 (+)
C57BL/6NJ	ENSMUSG00215024741	pseudogene	Chr18:6383765-6388706 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017284	pseudogene	Chr18:6531237-6535943 (+)
CBA/J	ENSMUSG00210021984	pseudogene	Chr18:6653204-6658145 (+)
DBA/2J	ENSMUSG00185031762	pseudogene	Chr18:6662070-6667011 (+)
FVB/NJ	ENSMUSG00205037803	pseudogene	Chr18:6443155-6448097 (+)
JF1/MsJ	ENSUMUG00000041136	pseudogene	Chr18:6711095-6716039 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190010323	pseudogene	Chr18:6434895-6439836 (+)
NZO/HlLtJ	ENSMUSG00225034782	pseudogene	Chr18:8645535-8650476 (+)
PWK/PhJ	ENSLUMG00010010115	pseudogene	Chr18:6895558-6900503 (+)
SPRET/EiJ	ENSMSPG00010012007	pseudogene	Chr18:6556836-6561774 (+)
WSB/EiJ	ENSIUOG00005028639	pseudogene	Chr18:6511910-6516850 (+)

Homology

• Gene Tree
  Gm46641
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000117641 (Evidence)
• NCBI Gene
  108168401

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117641	Ensembl Gene Model | MGI Sequence Detail	4942	C57BL/6J
transcript	ENSMUST00000234100	Ensembl | MGI Sequence Detail	2777	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;