Gm46629 Pseudogene Detail

Summary

• Symbol
  Gm46629
• Name
  predicted gene, 46629

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5826266
  NCBI Gene: 108168387
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:80231983-80232285 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826266	pseudogene	Chr18:80231736-80235390 (-)
129S1/SvImJ	ENSMUSG00200028831	pseudogene	Chr18:77449305-77449607 (-)
A/J	ENSMUSG00195004842	pseudogene	Chr18:77533159-77533461 (-)
AKR/J	ENSMUSG00220017954	pseudogene	Chr18:77477542-77477844 (-)
BALB/cJ	ENSMUSG00180013461	pseudogene	Chr18:78103382-78103684 (-)
C3H/HeJ	ENSMUSG00175012997	pseudogene	Chr18:77649080-77649382 (-)
C57BL/6NJ	ENSMUSG00215030002	pseudogene	Chr18:77011312-77011614 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028432	pseudogene	Chr18:76567141-76567441 (-)
CBA/J	ENSMUSG00210037044	pseudogene	Chr18:77599683-77599985 (-)
DBA/2J	ENSMUSG00185012074	pseudogene	Chr18:77504920-77505222 (-)
FVB/NJ	ENSMUSG00205018551	pseudogene	Chr18:76926011-76926313 (-)
JF1/MsJ	ENSUMUG00000039259	pseudogene	Chr18:77415804-77416106 (-)
LP/J	ENSMUSG00230013468	pseudogene	Chr18:79555632-79555934 (-)
NOD/ShiLtJ	ENSMUSG00190024007	pseudogene	Chr18:77305487-77305789 (-)
NZO/HlLtJ	ENSMUSG00225035243	pseudogene	Chr18:79435271-79435573 (-)
PWK/PhJ	ENSLUMG00010007098	pseudogene	Chr18:77799128-77799430 (-)
SPRET/EiJ	ENSMSPG00010009363	pseudogene	Chr18:78159737-78160037 (-)
WSB/EiJ	ENSIUOG00005008236	pseudogene	Chr18:76981644-76981946 (-)

Homology

• Gene Tree
  Gm46629
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000118244 (Evidence)
• NCBI Gene
  108168387

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118244	Ensembl Gene Model | MGI Sequence Detail	303	C57BL/6J
transcript	ENSMUST00000236227	Ensembl | MGI Sequence Detail	303	Not Applicable
polypeptide	XP_036017246	RefSeq | MGI Sequence Detail	83	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;