Gm46620 Gene Detail

Summary

• Symbol
  Gm46620
• Name
  predicted gene, 46620

• Feature Type
  lncRNA gene
• IDs
  MGI:5826257
  NCBI Gene: 108168376
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:82712412-82719461 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  104

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826257	lncRNA gene	Chr18:82712412-82719461 (+)
129S1/SvImJ	ENSMUSG00200021493	lncRNA gene	Chr16:60002921-60004772 (-)
129S1/SvImJ	ENSMUSG00200001473	lncRNA gene	Chr5:72774780-72776631 (+)
129S1/SvImJ	ENSMUSG00200041699	lncRNA gene	Chr2:165482953-165484804 (+)
129S1/SvImJ	ENSMUSG00200012229	lncRNA gene	Chr5:12014319-12016170 (-)
129S1/SvImJ	ENSMUSG00200050755	lncRNA gene	Chr4:103059157-103061008 (+)
129S1/SvImJ	ENSMUSG00200016053	lncRNA gene	ChrX:10086853-10088704 (+)
129S1/SvImJ	ENSMUSG00200017844	lncRNA gene	Chr2:153099082-153100933 (+)
129S1/SvImJ	ENSMUSG00200033070	lncRNA gene	Chr9:111883672-111885523 (+)
129S1/SvImJ	ENSMUSG00200023007	lncRNA gene	Chr1:179851338-179853189 (+)
A/J	ENSMUSG00195025944	lncRNA gene	Chr16:59596962-59598815 (-)
A/J	ENSMUSG00195007690	lncRNA gene	ChrX:10079972-10081825 (+)
A/J	ENSMUSG00195026815	lncRNA gene	Chr2:165826717-165828570 (+)
A/J	ENSMUSG00195005211	lncRNA gene	Chr18:80021204-80028253 (+)
A/J	ENSMUSG00195047910	lncRNA gene	Chr15:96926605-96928458 (-)
A/J	ENSMUSG00195053489	lncRNA gene	Chr11:99221352-99223205 (+)
A/J	ENSMUSG00195048344	lncRNA gene	Chr4:103602130-103603983 (+)
A/J	ENSMUSG00195044991	lncRNA gene	Chr7:77412537-77419687 (+)
AKR/J	ENSMUSG00220017543	lncRNA gene	Chr18:79940733-79947782 (+)
AKR/J	ENSMUSG00220038555	lncRNA gene	Chr2:165128572-165130425 (+)
AKR/J	ENSMUSG00220053413	lncRNA gene	Chr15:73544793-73546646 (-)
AKR/J	ENSMUSG00220052750	lncRNA gene	Chr3:87098097-87099950 (-)
AKR/J	ENSMUSG00220030745	lncRNA gene	Chr10:38156666-38158519 (+)
AKR/J	ENSMUSG00220004322	lncRNA gene	Chr3:137770561-137772415 (-)
AKR/J	ENSMUSG00220017780	lncRNA gene	Chr16:4081612-4083465 (-)
AKR/J	ENSMUSG00220044690	lncRNA gene	Chr7:70876061-70883211 (+)
BALB/cJ	ENSMUSG00180041341	lncRNA gene	Chr7:74092010-74099160 (+)
BALB/cJ	ENSMUSG00180025561	lncRNA gene	Chr16:59756872-59758725 (-)
BALB/cJ	ENSMUSG00180024274	lncRNA gene	ChrX:10073520-10075373 (+)
BALB/cJ	ENSMUSG00180000127	lncRNA gene	Chr5:71846574-71848427 (+)
BALB/cJ	ENSMUSG00180041166	lncRNA gene	Chr2:165274813-165276666 (+)
BALB/cJ	ENSMUSG00180021677	lncRNA gene	Chr2:54245133-54246986 (-)
BALB/cJ	ENSMUSG00180013919	lncRNA gene	Chr18:80587916-80594966 (+)
C3H/HeJ	ENSMUSG00175046533	lncRNA gene	Chr2:166046598-166048451 (+)
C3H/HeJ	ENSMUSG00175045539	lncRNA gene	Chr7:21983136-21984989 (+)
C3H/HeJ	ENSMUSG00175031014	lncRNA gene	ChrX:10096046-10097899 (+)
C3H/HeJ	ENSMUSG00175049567	lncRNA gene	Chr15:97106613-97108466 (-)
C3H/HeJ	ENSMUSG00175018282	lncRNA gene	Chr16:60037013-60038866 (-)
C3H/HeJ	ENSMUSG00175013810	lncRNA gene	Chr18:80128095-80135144 (+)
C57BL/6NJ	ENSMUSG00215022819	lncRNA gene	ChrX:10726285-10728138 (+)
C57BL/6NJ	ENSMUSG00215000553	lncRNA gene	Chr5:72661141-72662994 (+)
C57BL/6NJ	ENSMUSG00215035919	lncRNA gene	Chr11:3589899-3591752 (-)
C57BL/6NJ	ENSMUSG00215042636	lncRNA gene	Chr5:138062433-138064286 (+)
C57BL/6NJ	ENSMUSG00215009779	lncRNA gene	Chr2:54293752-54295605 (-)
C57BL/6NJ	ENSMUSG00215036687	lncRNA gene	Chr4:103337516-103339369 (-)
C57BL/6NJ	ENSMUSG00215035960	lncRNA gene	Chr11:5771580-5773433 (+)
C57BL/6NJ	ENSMUSG00215027020	lncRNA gene	Chr18:79507056-79514105 (+)
C57BL/6NJ	ENSMUSG00215037776	lncRNA gene	Chr16:90385817-90387670 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210018609	lncRNA gene	Chr11:3578887-3580740 (-)
CBA/J	ENSMUSG00210028644	lncRNA gene	Chr7:21145755-21147608 (+)
CBA/J	ENSMUSG00210036126	lncRNA gene	Chr18:80078563-80085612 (+)
CBA/J	ENSMUSG00210045616	lncRNA gene	Chr2:165955037-165956890 (+)
CBA/J	ENSMUSG00210020932	lncRNA gene	ChrX:10135176-10137029 (+)
CBA/J	ENSMUSG00210009745	lncRNA gene	Chr11:19325599-19327452 (+)
DBA/2J	ENSMUSG00185027409	lncRNA gene	Chr3:124607262-124609115 (+)
DBA/2J	ENSMUSG00185019563	lncRNA gene	Chr11:3676639-3678492 (-)
DBA/2J	ENSMUSG00185025989	lncRNA gene	Chr16:59934292-59936145 (-)
DBA/2J	ENSMUSG00185045006	lncRNA gene	Chr15:95794584-95801734 (+)
DBA/2J	ENSMUSG00185010233	lncRNA gene	Chr13:60943079-60944932 (-)
DBA/2J	ENSMUSG00185011746	lncRNA gene	Chr18:79983884-79990933 (+)
DBA/2J	ENSMUSG00185027630	lncRNA gene	Chr2:165668798-165670651 (+)
DBA/2J	ENSMUSG00185003782	lncRNA gene	Chr3:140097151-140099004 (-)
DBA/2J	ENSMUSG00185018165	lncRNA gene	Chr5:13826081-13827934 (-)
DBA/2J	ENSMUSG00185037499	lncRNA gene	ChrX:16737780-16739633 (+)
FVB/NJ	ENSMUSG00205038574	lncRNA gene	ChrX:9791175-9793028 (+)
FVB/NJ	ENSMUSG00205016934	lncRNA gene	Chr4:95688638-95690491 (-)
FVB/NJ	ENSMUSG00205026283	lncRNA gene	Chr7:20895100-20896954 (+)
FVB/NJ	ENSMUSG00205017793	lncRNA gene	Chr18:79391949-79398998 (+)
FVB/NJ	ENSMUSG00205033681	lncRNA gene	Chr2:164701526-164703379 (+)
FVB/NJ	ENSMUSG00205040532	lncRNA gene	Chr7:74585218-74592368 (+)
FVB/NJ	ENSMUSG00205027939	lncRNA gene	Chr3:138392516-138394369 (-)
FVB/NJ	ENSMUSG00205016965	lncRNA gene	Chr4:102013830-102015683 (+)
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190030746	lncRNA gene	ChrX:10105686-10107539 (+)
NOD/ShiLtJ	ENSMUSG00190023482	lncRNA gene	Chr7:88680025-88685392 (+)
NOD/ShiLtJ	ENSMUSG00190005153	lncRNA gene	Chr3:140464356-140466210 (-)
NOD/ShiLtJ	ENSMUSG00190033993	lncRNA gene	Chr7:74828568-74835718 (+)
NOD/ShiLtJ	ENSMUSG00190023213	lncRNA gene	Chr18:79809005-79816054 (+)
NOD/ShiLtJ	ENSMUSG00190046405	lncRNA gene	Chr2:165359958-165361811 (+)
NOD/ShiLtJ	ENSMUSG00190045426	lncRNA gene	ChrX:85134408-85136261 (-)
NOD/ShiLtJ	ENSMUSG00190040965	lncRNA gene	Chr13:59852459-59854312 (-)
NZO/HlLtJ	ENSMUSG00225023692	lncRNA gene	Chr18:81908997-81916046 (+)
NZO/HlLtJ	ENSMUSG00225035140	lncRNA gene	Chr5:84395728-84397581 (+)
NZO/HlLtJ	ENSMUSG00225003515	lncRNA gene	Chr3:144514356-144516210 (-)
NZO/HlLtJ	ENSMUSG00225011025	lncRNA gene	Chr4:152537396-152539252 (+)
NZO/HlLtJ	ENSMUSG00225034138	lncRNA gene	ChrX:26541906-26543759 (+)
NZO/HlLtJ	ENSMUSG00225019672	lncRNA gene	Chr10:44498669-44500522 (+)
NZO/HlLtJ	ENSMUSG00225044334	lncRNA gene	Chr8:128377497-128379350 (-)
NZO/HlLtJ	ENSMUSG00225032720	lncRNA gene	ChrX:61044777-61046630 (+)
NZO/HlLtJ	ENSMUSG00225041304	lncRNA gene	Chr12:59031549-59033402 (+)
NZO/HlLtJ	ENSMUSG00225044496	lncRNA gene	Chr15:97531661-97533514 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010034520	lncRNA gene	Chr13:40672759-40679910 (+)
SPRET/EiJ	ENSMSPG00010047443	lncRNA gene	Chr6:116055519-116061159 (-)
SPRET/EiJ	ENSMSPG00010017801	lncRNA gene	Chr10:121522691-121529841 (+)
SPRET/EiJ	ENSMSPG00010045097	lncRNA gene	Chr2:119361233-119368383 (+)
WSB/EiJ	ENSIUOG00005024959	lncRNA gene	Chr17:51421879-51423703 (+)
WSB/EiJ	ENSIUOG00005046372	lncRNA gene	Chr16:10797782-10799635 (+)
WSB/EiJ	ENSIUOG00005015314	lncRNA gene	ChrX:91672802-91674653 (-)
WSB/EiJ	ENSIUOG00005024857	lncRNA gene	Chr2:139557270-139559121 (-)
WSB/EiJ	ENSIUOG00005041901	lncRNA gene	Chr1:168676406-168678230 (-)
WSB/EiJ	ENSIUOG00005045388	lncRNA gene	Chr5:27533595-27535447 (-)
WSB/EiJ	ENSIUOG00005052501	lncRNA gene	Chr17:26199448-26201299 (-)
WSB/EiJ	ENSIUOG00005013094	lncRNA gene	Chr12:66403039-66404890 (+)
WSB/EiJ	ENSIUOG00005004903	lncRNA gene	Chr4:41017344-41019195 (-)
WSB/EiJ	ENSIUOG00005008115	lncRNA gene	Chr11:2378404-2380255 (+)

Homology

• Gene Tree
  Gm46620
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  106

• Ensembl
  ENSMUSG00000118012 (Evidence)
• NCBI Gene
  108168376

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118012	Ensembl Gene Model | MGI Sequence Detail	7050	C57BL/6J
transcript	ENSMUST00000236930	Ensembl | MGI Sequence Detail	1875	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;