Gm46611 Pseudogene Detail

Summary

• Symbol
  Gm46611
• Name
  predicted gene, 46611

• Feature Type
  pseudogene
• IDs
  MGI:5826248
  NCBI Gene: 115488941
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:24076954-24077179 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826248	pseudogene	Chr18:24068224-24077235 (+)
129S1/SvImJ	ENSMUSG00200016504	pseudogene	Chr18:21073969-21074194 (+)
A/J	ENSMUSG00195002481	pseudogene	Chr18:21233236-21233458 (+)
AKR/J	ENSMUSG00220011795	pseudogene	Chr18:21228811-21229036 (+)
BALB/cJ	ENSMUSG00180003532	pseudogene	Chr18:21681861-21682086 (+)
C3H/HeJ	ENSMUSG00175023932	pseudogene	Chr18:21190309-21190531 (+)
C57BL/6NJ	ENSMUSG00215024210	pseudogene	Chr18:20933660-20933885 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016332	pseudogene	Chr18:20931280-20931502 (+)
CBA/J	ENSMUSG00210016230	pseudogene	Chr18:21231488-21231713 (+)
DBA/2J	ENSMUSG00185022656	pseudogene	Chr18:21176679-21176904 (+)
FVB/NJ	ENSMUSG00205023424	pseudogene	Chr18:20903128-20903353 (+)
JF1/MsJ	ENSUMUG00000027095	pseudogene	Chr18:21276549-21276771 (+)
LP/J	ENSMUSG00230006331	pseudogene	Chr18:23269904-23270129 (+)
NOD/ShiLtJ	ENSMUSG00190006970	pseudogene	Chr18:20991200-20991425 (+)
NZO/HlLtJ	ENSMUSG00225025808	pseudogene	Chr18:23213579-23213801 (+)
PWK/PhJ	ENSLUMG00010003664	pseudogene	Chr18:21459398-21459623 (+)
SPRET/EiJ	ENSMSPG00010022279	pseudogene	Chr18:21399944-21400169 (+)
WSB/EiJ	ENSIUOG00005002749	pseudogene	Chr18:21002715-21002937 (+)

Homology

• Gene Tree
  Gm46611
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000117504 (Evidence)
• NCBI Gene
  115488941

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117504	Ensembl Gene Model | MGI Sequence Detail	226	C57BL/6J
transcript	ENSMUST00000235052	Ensembl | MGI Sequence Detail	226	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46611:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150271	Chr18:24076907-24076910 (+)	-45 bp