Gm46597 Gene Detail

Summary

• Symbol
  Gm46597
• Name
  predicted gene, 46597

• Feature Type
  lncRNA gene
• IDs
  MGI:5826234
  NCBI Gene: 108168342
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:84079068-84085417 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  349 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826234	lncRNA gene	Chr17:84079048-84085452 (-)
129S1/SvImJ	ENSMUSG00200024903	lncRNA gene	Chr17:79469227-79475625 (-)
A/J	ENSMUSG00195028820	lncRNA gene	Chr17:80842639-80849045 (-)
AKR/J	ENSMUSG00220013752	lncRNA gene	Chr17:79800119-79806529 (-)
BALB/cJ	ENSMUSG00180005106	lncRNA gene	Chr17:80522610-80529011 (-)
C3H/HeJ	ENSMUSG00175016476	lncRNA gene	Chr17:79781118-79787528 (-)
C57BL/6NJ	ENSMUSG00215016589	lncRNA gene	Chr17:79516089-79522490 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015462	lncRNA gene	Chr17:80317546-80324061 (-)
CBA/J	ENSMUSG00210020895	lncRNA gene	Chr17:79639866-79646274 (-)
DBA/2J	ENSMUSG00185020879	lncRNA gene	Chr17:82467023-82473414 (-)
FVB/NJ	ENSMUSG00205032809	lncRNA gene	Chr17:80285948-80292349 (-)
JF1/MsJ	ENSUMUG00000015340	lncRNA gene	Chr17:82200512-82206907 (-)
LP/J	ENSMUSG00230010283	lncRNA gene	Chr17:83487756-83494156 (-)
NOD/ShiLtJ	ENSMUSG00190010418	lncRNA gene	Chr17:79553047-79559453 (-)
NZO/HlLtJ	ENSMUSG00225031630	lncRNA gene	Chr17:85748625-85755025 (-)
PWK/PhJ	ENSLUMG00010005755	lncRNA gene	Chr17:79402173-79408546 (-)
SPRET/EiJ	ENSMSPG00010008698	lncRNA gene	Chr17:79959308-79965690 (-)
WSB/EiJ	ENSIUOG00005010794	lncRNA gene	Chr17:80469238-80475651 (-)

Homology

• Gene Tree
  Gm46597
  

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000121244 (Evidence)
• NCBI Gene
  108168342

Representative Sequences			Length	Strain/Species
genomic	108168342	NCBI Gene Model | MGI Sequence Detail	6350	C57BL/6J
transcript	NR_168497	RefSeq | MGI Sequence Detail	574	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46597:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149607	Chr17:84085413-84085418 (-)	1 bp