Gm46577 Pseudogene Detail

Summary

• Symbol
  Gm46577
• Name
  predicted gene, 46577

• Feature Type
  pseudogene
• IDs
  MGI:5826214
  NCBI Gene: 108168320
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:55450176-55450547 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826214	pseudogene	Chr17:55450097-55450970 (+)
129S1/SvImJ	ENSMUSG00200028625	pseudogene	Chr17:50712646-50713017 (+)
A/J	ENSMUSG00195007197	pseudogene	Chr17:52119708-52120079 (+)
AKR/J	ENSMUSG00220038965	pseudogene	Chr17:51165644-51166015 (+)
BALB/cJ	ENSMUSG00180006570	pseudogene	Chr17:51875796-51876167 (+)
C3H/HeJ	ENSMUSG00175007843	pseudogene	Chr17:51182859-51183230 (+)
C57BL/6NJ	ENSMUSG00215037048	pseudogene	Chr17:50800270-50800641 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019436	pseudogene	Chr17:51952433-51952804 (+)
CBA/J	ENSMUSG00210040325	pseudogene	Chr17:50963133-50963504 (+)
DBA/2J	ENSMUSG00185009630	pseudogene	Chr17:53832987-53833358 (+)
FVB/NJ	ENSMUSG00205007582	pseudogene	Chr17:51506039-51506410 (+)
JF1/MsJ	ENSUMUG00000036052	pseudogene	Chr17:53527630-53528001 (+)
LP/J	ENSMUSG00230028997	pseudogene	Chr17:54800895-54801266 (+)
NOD/ShiLtJ	ENSMUSG00190011051	pseudogene	Chr17:50963091-50963462 (+)
NZO/HlLtJ	ENSMUSG00225043442	pseudogene	Chr17:57086316-57086687 (+)
PWK/PhJ	ENSLUMG00010036641	pseudogene	Chr17:50758377-50758748 (+)
SPRET/EiJ	ENSMSPG00010040097	pseudogene	Chr17:51050026-51050404 (+)
WSB/EiJ	ENSIUOG00005024746	pseudogene	Chr17:51873550-51873921 (+)

Homology

• Gene Tree
  Gm46577
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117249 (Evidence)
• NCBI Gene
  108168320

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117249	Ensembl Gene Model | MGI Sequence Detail	372	C57BL/6J
transcript	ENSMUST00000233678	Ensembl | MGI Sequence Detail	372	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;