Gm46563 Gene Detail

Summary

• Symbol
  Gm46563
• Name
  predicted gene, 46563

• Feature Type
  lncRNA gene
• IDs
  MGI:5826200
  NCBI Gene: 108168302
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr16:10602518-10630590 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  679 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826200	lncRNA gene	Chr16:10602518-10630590 (+)
129S1/SvImJ	ENSMUSG00200012279	lncRNA gene	Chr16:7620373-7635158 (+)
A/J	ENSMUSG00195011932	lncRNA gene	Chr16:7159415-7174199 (+)
AKR/J	ENSMUSG00220017356	lncRNA gene	Chr16:7448224-7463008 (+)
BALB/cJ	ENSMUSG00180008892	lncRNA gene	Chr16:7398612-7413397 (+)
C3H/HeJ	ENSMUSG00175031999	lncRNA gene	Chr16:7587756-7602419 (+)
C57BL/6NJ	ENSMUSG00215026720	lncRNA gene	Chr16:7265693-7280478 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032146	lncRNA gene	Chr16:7508825-7523593 (+)
CBA/J	ENSMUSG00210012254	lncRNA gene	Chr16:7604924-7619588 (+)
DBA/2J	ENSMUSG00185010169	lncRNA gene	Chr16:7550232-7564895 (+)
FVB/NJ	ENSMUSG00205013170	lncRNA gene	Chr16:7468661-7483444 (+)
JF1/MsJ	ENSUMUG00000039593	lncRNA gene	Chr16:7662682-7677466 (+)
LP/J	ENSMUSG00230046218	lncRNA gene	Chr16:10116155-10130938 (+)
NOD/ShiLtJ	ENSMUSG00190026442	lncRNA gene	Chr16:7650849-7665632 (+)
NZO/HlLtJ	ENSMUSG00225032292	lncRNA gene	Chr16:13335176-13349959 (+)
PWK/PhJ	ENSLUMG00010018040	lncRNA gene	Chr16:7512055-7529655 (+)
SPRET/EiJ	ENSMSPG00010018152	lncRNA gene	Chr16:7484254-7498751 (+)
WSB/EiJ	ENSIUOG00005017143	lncRNA gene	Chr16:7614454-7629241 (+)

Homology

• Gene Tree
  Gm46563
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41

• Ensembl
  ENSMUSG00000116038 (Evidence)
• NCBI Gene
  108168302

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116038	Ensembl Gene Model | MGI Sequence Detail	28073	C57BL/6J
transcript	ENSMUST00000359802	Ensembl | MGI Sequence Detail	914	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46563:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137052	Chr16:10606168-10606214 (+)	3,673 bp
Tssr137053	Chr16:10609297-10609312 (+)	6,787 bp
Tssr137054	Chr16:10609447-10609455 (+)	6,933 bp
Tssr137055	Chr16:10609665-10609682 (+)	7,156 bp
Tssr137056	Chr16:10609688-10609696 (+)	7,174 bp
Tssr4791	Chr16:10614222-10614234 (+)	11,710 bp
Tssr4792	Chr16:10614898-10614928 (+)	12,395 bp