Gm46544 Pseudogene Detail

Summary

• Symbol
  Gm46544
• Name
  predicted gene, 46544

• Feature Type
  pseudogene
• IDs
  MGI:5826181
  NCBI Gene: 108168277
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:20615977-20616523 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826181	pseudogene	Chr16:20615958-20616538 (-)
129S1/SvImJ	ENSMUSG00200047704	pseudogene	Chr16:17613463-17614009 (-)
A/J	ENSMUSG00195035842	pseudogene	Chr16:17171668-17172214 (-)
AKR/J	ENSMUSG00220046505	pseudogene	Chr16:17488705-17489251 (-)
BALB/cJ	ENSMUSG00180042945	pseudogene	Chr16:17412279-17412825 (-)
C3H/HeJ	ENSMUSG00175051624	pseudogene	Chr16:17557353-17557899 (-)
C57BL/6NJ	ENSMUSG00215041857	pseudogene	Chr16:17278282-17278828 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046599	pseudogene	Chr16:17885277-17885823 (-)
CBA/J	ENSMUSG00210048545	pseudogene	Chr16:17579083-17579629 (-)
DBA/2J	ENSMUSG00185036285	pseudogene	Chr16:17517826-17518372 (-)
FVB/NJ	ENSMUSG00205047583	pseudogene	Chr16:17520647-17521193 (-)
JF1/MsJ	ENSUMUG00000053611	pseudogene	Chr16:17710562-17711109 (-)
LP/J	ENSMUSG00230047841	pseudogene	Chr16:20097076-20097622 (-)
NOD/ShiLtJ	ENSMUSG00190050805	pseudogene	Chr16:17659345-17659891 (-)
NZO/HlLtJ	ENSMUSG00225039239	pseudogene	Chr16:23348143-23348689 (-)
PWK/PhJ	ENSLUMG00010050542	pseudogene	Chr16:17536738-17537285 (-)
SPRET/EiJ	ENSMSPG00010047559	pseudogene	Chr16:17399003-17399549 (-)
WSB/EiJ	ENSIUOG00005044998	pseudogene	Chr16:17752635-17753181 (-)

Homology

• Gene Tree
  Gm46544
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000116776 (Evidence)
• NCBI Gene
  108168277

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116776	Ensembl Gene Model | MGI Sequence Detail	547	C57BL/6J
transcript	ENSMUST00000232027	Ensembl | MGI Sequence Detail	547	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;