Gm46540 Pseudogene Detail

Summary

• Symbol
  Gm46540
• Name
  predicted gene, 46540

• Feature Type
  pseudogene
• IDs
  MGI:5826177
  NCBI Gene: 108168271
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:16750725-16750959 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826177	pseudogene	Chr16:16749237-16752358 (+)
129S1/SvImJ	ENSMUSG00200048636	pseudogene	Chr16:13747244-13747478 (+)
A/J	ENSMUSG00195035578	pseudogene	Chr16:13304457-13304691 (+)
AKR/J	ENSMUSG00220045506	pseudogene	Chr16:13620770-13621004 (+)
BALB/cJ	ENSMUSG00180043060	pseudogene	Chr16:13545737-13545971 (+)
C3H/HeJ	ENSMUSG00175050746	pseudogene	Chr16:13690764-13690998 (+)
C57BL/6NJ	ENSMUSG00215042923	pseudogene	Chr16:13411884-13412118 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045413	pseudogene	Chr16:13614245-13614479 (+)
CBA/J	ENSMUSG00210048011	pseudogene	Chr16:13707093-13707327 (+)
DBA/2J	ENSMUSG00185034568	pseudogene	Chr16:13653245-13653479 (+)
FVB/NJ	ENSMUSG00205047447	pseudogene	Chr16:13660810-13661044 (+)
JF1/MsJ	ENSUMUG00000054244	pseudogene	Chr16:13745347-13745582 (+)
LP/J	ENSMUSG00230045749	pseudogene	Chr16:16231164-16231398 (+)
NOD/ShiLtJ	ENSMUSG00190051328	pseudogene	Chr16:13793191-13793425 (+)
NZO/HlLtJ	ENSMUSG00225032191	pseudogene	Chr16:19476969-19477203 (+)
PWK/PhJ	ENSLUMG00010050816	pseudogene	Chr16:13628459-13628694 (+)
SPRET/EiJ	ENSMSPG00010046786	pseudogene	Chr16:13655204-13655439 (+)
WSB/EiJ	ENSIUOG00005045188	pseudogene	Chr16:13784750-13784984 (+)

Homology

• Gene Tree
  Gm46540
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000116703 (Evidence)
• NCBI Gene
  108168271

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116703	Ensembl Gene Model | MGI Sequence Detail	235	C57BL/6J
transcript	ENSMUST00000231540	Ensembl | MGI Sequence Detail	235	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;