Gm46516 Gene Detail

Summary

• Symbol
  Gm46516
• Name
  predicted gene, 46516

• Feature Type
  lncRNA gene
• IDs
  MGI:5826153
  NCBI Gene: 108168241
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:55786800-55833446 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1406 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826153	lncRNA gene	Chr15:55786789-55869152 (+)
129S1/SvImJ	ENSMUSG00200031346	lncRNA gene	Chr15:52765037-52802553 (+)
A/J	ENSMUSG00195006573	lncRNA gene	Chr15:52800244-52837760 (+)
AKR/J	ENSMUSG00220021611	lncRNA gene	Chr15:52800531-52838104 (+)
BALB/cJ	ENSMUSG00180009389	lncRNA gene	Chr15:52750997-52788520 (+)
C3H/HeJ	ENSMUSG00175004874	lncRNA gene	Chr15:53004015-53041528 (+)
C57BL/6NJ	ENSMUSG00215017715	lncRNA gene	Chr15:52744760-52782266 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007235	lncRNA gene	Chr15:52622566-52666504 (+)
CBA/J	ENSMUSG00210007265	lncRNA gene	Chr15:52831209-52868725 (+)
DBA/2J	ENSMUSG00185028051	lncRNA gene	Chr15:52808746-52846250 (+)
FVB/NJ	ENSMUSG00205006803	lncRNA gene	Chr15:52655787-52693305 (+)
JF1/MsJ	ENSUMUG00000030405	lncRNA gene	Chr15:52638610-52675739 (+)
LP/J	ENSMUSG00230009004	lncRNA gene	Chr15:56123726-56161238 (+)
NOD/ShiLtJ	ENSMUSG00190017953	lncRNA gene	Chr15:52804273-52841789 (+)
NZO/HlLtJ	ENSMUSG00225028870	lncRNA gene	Chr15:56450657-56488222 (+)
PWK/PhJ	ENSLUMG00010028638	lncRNA gene	Chr15:52868444-52905580 (+)
SPRET/EiJ	ENSMSPG00010024516	lncRNA gene	Chr15:53978614-54022524 (+)
WSB/EiJ	ENSIUOG00005006511	lncRNA gene	Chr15:52803913-52841496 (+)

Homology

• Gene Tree
  Gm46516
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  5

• Ensembl
  ENSMUSG00000115200 (Evidence)
• NCBI Gene
  108168241

Representative Sequences			Length	Strain/Species
genomic	108168241	NCBI Gene Model | MGI Sequence Detail	46647	C57BL/6J
transcript	XR_001781696	RefSeq | MGI Sequence Detail	394	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;