Gm46499 Pseudogene Detail

Summary

• Symbol
  Gm46499
• Name
  predicted gene, 46499

• Feature Type
  pseudogene
• IDs
  MGI:5826136
  NCBI Gene: 108168216
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:63632010-63632429 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826136	pseudogene	Chr15:63631994-63632431 (+)
129S1/SvImJ	ENSMUSG00200030827	pseudogene	Chr15:60664840-60665259 (+)
A/J	ENSMUSG00195006380	pseudogene	Chr15:60688259-60688678 (+)
AKR/J	ENSMUSG00220021890	pseudogene	Chr15:60604713-60605132 (+)
BALB/cJ	ENSMUSG00180009557	pseudogene	Chr15:60597400-60597819 (+)
C3H/HeJ	ENSMUSG00175005179	pseudogene	Chr15:60888816-60889235 (+)
C57BL/6NJ	ENSMUSG00215012439	pseudogene	Chr15:60615714-60616133 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006914	pseudogene	Chr15:60440234-60440654 (+)
CBA/J	ENSMUSG00210007167	pseudogene	Chr15:60720465-60720884 (+)
DBA/2J	ENSMUSG00185026684	pseudogene	Chr15:60655917-60656336 (+)
FVB/NJ	ENSMUSG00205007335	pseudogene	Chr15:60414659-60415079 (+)
JF1/MsJ	ENSUMUG00000031693	pseudogene	Chr15:60427877-60428297 (+)
LP/J	ENSMUSG00230025387	pseudogene	Chr15:63991555-63991974 (+)
NOD/ShiLtJ	ENSMUSG00190017138	pseudogene	Chr15:60704271-60704690 (+)
NZO/HlLtJ	ENSMUSG00225027217	pseudogene	Chr15:64274116-64274535 (+)
PWK/PhJ	ENSLUMG00010029075	pseudogene	Chr15:60738322-60738742 (+)
SPRET/EiJ	ENSMSPG00010004493	pseudogene	Chr15:62126468-62126880 (+)
WSB/EiJ	ENSIUOG00005006665	pseudogene	Chr15:60714353-60714773 (+)

Homology

• Gene Tree
  Gm46499
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  6
• Transposon induced
  6
• Genomic Mutations
  6 involving Gm46499
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000115682 (Evidence)
• NCBI Gene
  108168216

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115682	Ensembl Gene Model | MGI Sequence Detail	420	C57BL/6J
transcript	ENSMUST00000226151	Ensembl | MGI Sequence Detail	420	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:212391 Uslu VV, et al., Long-range enhancers regulating Myc expression are required for normal facial morphogenesis. Nat Genet. 2014 Jul;46(7):753-8
• Latest
  J:257739 Bahr C, et al., A Myc enhancer cluster regulates normal and leukaemic haematopoietic stem cell hierarchies. Nature. 2018 Jan 25;553(7689):515-520