Gm46477 Pseudogene Detail

Summary

• Symbol
  Gm46477
• Name
  predicted gene, 46477

• Feature Type
  pseudogene
• IDs
  MGI:5826114
  NCBI Gene: 108168193
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:98511285-98511705 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826114	pseudogene	Chr14:98511285-98511705 (-)
129S1/SvImJ	ENSMUSG00200019575	pseudogene	Chr14:87040745-87041165 (-)
A/J	ENSMUSG00195019900	pseudogene	Chr14:87213763-87214183 (-)
AKR/J	ENSMUSG00220002275	pseudogene	Chr14:86600671-86601091 (-)
BALB/cJ	ENSMUSG00180004696	pseudogene	Chr14:86696856-86697276 (-)
C3H/HeJ	ENSMUSG00175002764	pseudogene	Chr14:88562994-88563414 (-)
C57BL/6NJ	ENSMUSG00215020579	pseudogene	Chr14:86746576-86746996 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016355	pseudogene	Chr14:88185984-88186404 (-)
CBA/J	ENSMUSG00210007831	pseudogene	Chr14:87241703-87242123 (-)
DBA/2J	ENSMUSG00185011410	pseudogene	Chr14:92422793-92423213 (-)
FVB/NJ	ENSMUSG00205014168	pseudogene	Chr14:86330358-86330778 (-)
JF1/MsJ	ENSUMUG00000012740	pseudogene	Chr14:103407575-103407995 (-)
LP/J	ENSMUSG00230004107	pseudogene	Chr14:104280939-104281359 (-)
NOD/ShiLtJ	ENSMUSG00190009776	pseudogene	Chr14:87035841-87036261 (-)
NZO/HlLtJ	ENSMUSG00225025208	pseudogene	Chr14:94689326-94689746 (-)
PWK/PhJ	ENSLUMG00010004795	pseudogene	Chr14:86279849-86280269 (-)
SPRET/EiJ	ENSMSPG00010009497	pseudogene	Chr14:90124862-90125282 (-)
WSB/EiJ	ENSIUOG00005018358	pseudogene	Chr14:86210472-86210892 (-)

Homology

• Gene Tree
  Gm46477
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000115218 (Evidence)
• NCBI Gene
  108168193

Representative Sequences			Length	Strain/Species
genomic	108168193	NCBI Gene Model | MGI Sequence Detail	421	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;