Gm46448 Pseudogene Detail

Summary

• Symbol
  Gm46448
• Name
  predicted gene, 46448

• Feature Type
  pseudogene
• IDs
  MGI:5826085
  NCBI Gene: 108168147
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:33154090-33154897 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826085	pseudogene	Chr14:33154090-33154897 (+)
129S1/SvImJ	ENSMUSG00200038592	pseudogene	Chr14:24982681-24983488 (+)
A/J	ENSMUSG00195014626	pseudogene	Chr14:26054731-26055538 (+)
AKR/J	ENSMUSG00220036481	pseudogene	Chr14:25173455-25174262 (+)
BALB/cJ	ENSMUSG00180030207	pseudogene	Chr14:25143214-25144021 (+)
C3H/HeJ	ENSMUSG00175044556	pseudogene	Chr14:25210401-25211208 (+)
C57BL/6NJ	ENSMUSG00215035891	pseudogene	Chr14:25447082-25447889 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025142	pseudogene	Chr14:25288264-25289071 (+)
CBA/J	ENSMUSG00210046106	pseudogene	Chr14:25457569-25458376 (+)
DBA/2J	ENSMUSG00185044053	pseudogene	Chr14:29726930-29727737 (+)
FVB/NJ	ENSMUSG00205038291	pseudogene	Chr14:25315127-25315934 (+)
JF1/MsJ	ENSUMUG00000049745	pseudogene	Chr14:36972535-36973342 (+)
LP/J	ENSMUSG00230037903	pseudogene	Chr14:37006665-37007472 (+)
NOD/ShiLtJ	ENSMUSG00190020440	pseudogene	Chr14:25466836-25467643 (+)
NZO/HlLtJ	ENSMUSG00225037356	pseudogene	Chr14:31341563-31342370 (+)
PWK/PhJ	ENSLUMG00010022681	pseudogene	Chr14:13580663-13581471 (+)
SPRET/EiJ	ENSMSPG00010043435	pseudogene	Chr14:27153389-27154196 (+)
WSB/EiJ	ENSIUOG00005012673	pseudogene	Chr14:25302406-25303213 (+)

Homology

• Gene Tree
  Gm46448
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115745 (Evidence)
• NCBI Gene
  108168147

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115745	Ensembl Gene Model | MGI Sequence Detail	808	C57BL/6J
transcript	ENSMUST00000228189	Ensembl | MGI Sequence Detail	808	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;