Gm46430 Gene Detail

Summary

• Symbol
  Gm46430
• Name
  predicted gene, 46430

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5826067
  NCBI Gene: 108168101
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:74751620-74766083 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  558 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826067	protein coding gene	Chr13:74724398-74766166 (-)
129S1/SvImJ	ENSMUSG00200014228	lncRNA gene	Chr13:69137445-69176086 (-)
A/J	ENSMUSG00195030019	lncRNA gene	Chr13:69712115-69750764 (-)
AKR/J	ENSMUSG00220039286	lncRNA gene	Chr13:68303279-68341921 (-)
BALB/cJ	ENSMUSG00180028334	lncRNA gene	Chr13:70210434-70249088 (-)
C3H/HeJ	ENSMUSG00175008775	lncRNA gene	Chr13:70488735-70527381 (-)
C57BL/6NJ	ENSMUSG00215014551	lncRNA gene	Chr13:70298674-70337273 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012071	lncRNA gene	Chr13:69769199-69807099 (-)
CBA/J	ENSMUSG00210009727	lncRNA gene	Chr13:69806546-69845143 (-)
DBA/2J	ENSMUSG00185018429	lncRNA gene	Chr13:73498099-73536696 (-)
FVB/NJ	ENSMUSG00205026619	lncRNA gene	Chr13:69190628-69229269 (-)
JF1/MsJ	ENSUMUG00000032422	lncRNA gene	Chr13:73239880-73277775 (-)
LP/J	ENSMUSG00230027873	lncRNA gene	Chr13:83416764-83455360 (-)
NOD/ShiLtJ	ENSMUSG00190043527	lncRNA gene	Chr13:69808133-69864280 (-)
NZO/HlLtJ	ENSMUSG00225028364	lncRNA gene	Chr13:75929204-75967839 (-)
PWK/PhJ	ENSLUMG00010012051	lncRNA gene	Chr13:69305846-69343742 (-)
SPRET/EiJ	ENSMSPG00010036728	lncRNA gene	Chr13:70119259-70272134 (-)
WSB/EiJ	ENSIUOG00005025040	lncRNA gene	Chr13:69044465-69082287 (-)

Homology

• Gene Tree
  Gm46430
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  124
• RefSeq
  26

• Ensembl
  ENSMUSG00000113204 (Evidence)
• NCBI Gene
  108168101

Representative Sequences			Length	Strain/Species
genomic	108168101	NCBI Gene Model | MGI Sequence Detail	14464	C57BL/6J
transcript	NM_001378681	RefSeq | MGI Sequence Detail	3906	ZRU/MplStud
polypeptide	NP_001365610	RefSeq | MGI Sequence Detail	400	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46430:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123229	Chr13:74765408-74765445 (-)	656 bp
Tssr123228	Chr13:74765384-74765403 (-)	689 bp