Gm46426 Pseudogene Detail

Summary

• Symbol
  Gm46426
• Name
  predicted gene, 46426

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5826063
  NCBI Gene: 115488129
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:66428950-66431965 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  76 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826063	pseudogene	Chr13:66428950-66436598 (-)
129S1/SvImJ	ENSMUSG00200013912	pseudogene	Chr13:61750913-61754349 (-)
A/J	ENSMUSG00195031233	pseudogene	Chr13:61845431-61848794 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180029958	pseudogene	Chr13:62359585-62362859 (-)
C3H/HeJ	ENSMUSG00175008918	pseudogene	Chr13:62667392-62670675 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185009798	pseudogene	Chr13:63458490-63459431 (-)
FVB/NJ	ENSMUSG00205034008	pseudogene	Chr13:61414879-61418235 (-)
JF1/MsJ	ENSUMUG00000038696	pseudogene	Chr13:64117975-64121250 (-)
LP/J	ENSMUSG00230036458	pseudogene	Chr13:73507005-73510016 (-)
LP/J	ENSMUSG00230034926	pseudogene	Chr13:72870570-72873588 (+)
NOD/ShiLtJ	ENSMUSG00190042813	pseudogene	Chr13:61940296-61943581 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010036435	pseudogene	Chr13:62279028-62282354 (-)
WSB/EiJ	ENSIUOG00005024329	pseudogene	Chr13:61259240-61262134 (-)
WSB/EiJ	ENSIUOG00005024318	pseudogene	Chr13:61012787-61013728 (+)

Homology

• Gene Tree
  Gm46426
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm46426
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  2

• Ensembl
  ENSMUSG00000118666 (Evidence)
• NCBI Gene
  115488129

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118666	Ensembl Gene Model | MGI Sequence Detail	3016	C57BL/6J
transcript	ENSMUST00000239522	Ensembl | MGI Sequence Detail	1567	Not Applicable
polypeptide	XP_030103358	RefSeq | MGI Sequence Detail	215	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:370032 Takeda I, et al., Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes Cells. 2021 Nov;26(11):874-890