Gm46416 Gene Detail

Summary

• Symbol
  Gm46416
• Name
  predicted gene, 46416

• Feature Type
  lncRNA gene
• IDs
  MGI:5826053
  NCBI Gene: 108168085
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:55683808-55696672 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  240 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826053	lncRNA gene	Chr13:55683808-55696680 (+)
129S1/SvImJ	ENSMUSG00200017336	lncRNA gene	Chr13:52556392-52557021 (+)
A/J	ENSMUSG00195045277	lncRNA gene	Chr13:52015188-52015817 (+)
AKR/J	ENSMUSG00220043423	lncRNA gene	Chr13:51563767-51564396 (+)
BALB/cJ	ENSMUSG00180017131	lncRNA gene	Chr13:52266453-52267082 (+)
C3H/HeJ	ENSMUSG00175046777	lncRNA gene	Chr13:52052903-52053532 (+)
C57BL/6NJ	ENSMUSG00215039596	lncRNA gene	Chr13:52085851-52086480 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041714	lncRNA gene	Chr13:52478536-52479178 (+)
CBA/J	ENSMUSG00210039311	lncRNA gene	Chr13:52257720-52258349 (+)
DBA/2J	ENSMUSG00185018720	lncRNA gene	Chr13:53107721-53108350 (+)
FVB/NJ	ENSMUSG00205046449	lncRNA gene	Chr13:51910483-51911112 (+)
JF1/MsJ	ENSUMUG00000035072	lncRNA gene	Chr13:52500564-52501202 (+)
LP/J	ENSMUSG00230035563	lncRNA gene	Chr13:62449808-62450437 (+)
NOD/ShiLtJ	ENSMUSG00190038644	lncRNA gene	Chr13:52150645-52151274 (+)
NZO/HlLtJ	ENSMUSG00225035378	lncRNA gene	Chr13:56179500-56180129 (+)
PWK/PhJ	ENSLUMG00010023729	lncRNA gene	Chr13:51372547-51373186 (+)
SPRET/EiJ	ENSMSPG00010042318	lncRNA gene	Chr13:51791065-51791694 (+)
WSB/EiJ	ENSIUOG00005025354	lncRNA gene	Chr13:51582297-51582926 (+)

Homology

• Gene Tree
  Gm46416
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2

• Ensembl
  ENSMUSG00000114633 (Evidence)
• NCBI Gene
  108168085

Representative Sequences			Length	Strain/Species
genomic	108168085	NCBI Gene Model | MGI Sequence Detail	12865	C57BL/6J
transcript	XR_001780952	RefSeq | MGI Sequence Detail	2386	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;