Gm46415 Pseudogene Detail

Summary

• Symbol
  Gm46415
• Name
  predicted gene, 46415

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5826052
  NCBI Gene: 108168084
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:55275652-55275996 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826052	pseudogene	Chr13:55275589-55276052 (-)
129S1/SvImJ	ENSMUSG00200016909	pseudogene	Chr13:52150490-52150834 (-)
A/J	ENSMUSG00195046871	pseudogene	Chr13:51613339-51613683 (-)
AKR/J	ENSMUSG00220044112	pseudogene	Chr13:51160242-51160586 (-)
BALB/cJ	ENSMUSG00180017884	pseudogene	Chr13:51864601-51864945 (-)
C3H/HeJ	ENSMUSG00175045275	pseudogene	Chr13:51651083-51651427 (-)
C57BL/6NJ	ENSMUSG00215040605	pseudogene	Chr13:51677367-51677711 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040419	pseudogene	Chr13:52074470-52074894 (-)
CBA/J	ENSMUSG00210042990	pseudogene	Chr13:51855895-51856239 (-)
DBA/2J	ENSMUSG00185017696	pseudogene	Chr13:52701838-52702182 (-)
FVB/NJ	ENSMUSG00205042546	pseudogene	Chr13:51506973-51507317 (-)
JF1/MsJ	ENSUMUG00000042767	pseudogene	Chr13:52097449-52097793 (-)
LP/J	ENSMUSG00230035198	pseudogene	Chr13:62046305-62046649 (-)
NOD/ShiLtJ	ENSMUSG00190038230	pseudogene	Chr13:51747205-51747549 (-)
NZO/HlLtJ	ENSMUSG00225035200	pseudogene	Chr13:55773629-55773973 (-)
PWK/PhJ	ENSLUMG00010023066	pseudogene	Chr13:50971423-50971767 (-)
SPRET/EiJ	ENSMSPG00010041693	pseudogene	Chr13:51388718-51389062 (-)
WSB/EiJ	ENSIUOG00005025615	pseudogene	Chr13:51177906-51178250 (-)

Homology

• Gene Tree
  Gm46415
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000114481 (Evidence)
• NCBI Gene
  108168084

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114481	Ensembl Gene Model | MGI Sequence Detail	345	C57BL/6J
transcript	ENSMUST00000224848	Ensembl | MGI Sequence Detail	345	Not Applicable
polypeptide	XP_017171160	RefSeq | MGI Sequence Detail	135	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;