Gm46412 Gene Detail

Summary

• Symbol
  Gm46412
• Name
  predicted gene, 46412

• Feature Type
  lncRNA gene
• IDs
  MGI:5826049
  NCBI Gene: 108168080
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr13:46878731-46894497 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  351 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826049	lncRNA gene	Chr13:46872485-46894497 (+)
129S1/SvImJ	ENSMUSG00200036063	lncRNA gene	Chr13:44133643-44145566 (+)
A/J	ENSMUSG00195029549	lncRNA gene	Chr13:43193495-43205417 (+)
AKR/J	ENSMUSG00220009606	lncRNA gene	Chr13:42998483-43010392 (+)
BALB/cJ	ENSMUSG00180008820	lncRNA gene	Chr13:43495908-43507830 (+)
C3H/HeJ	ENSMUSG00175029237	lncRNA gene	Chr13:43460115-43472036 (+)
C57BL/6NJ	ENSMUSG00215007888	lncRNA gene	Chr13:43623449-43635357 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031718	lncRNA gene	Chr13:43525515-43537425 (+)
CBA/J	ENSMUSG00210027639	lncRNA gene	Chr13:43465605-43477527 (+)
DBA/2J	ENSMUSG00185033313	lncRNA gene	Chr13:44285686-44297601 (+)
FVB/NJ	ENSMUSG00205012593	lncRNA gene	Chr13:43245738-43257658 (+)
JF1/MsJ	ENSUMUG00000017571	lncRNA gene	Chr13:43798816-43810737 (+)
LP/J	ENSMUSG00230030073	lncRNA gene	Chr13:53597788-53609707 (+)
NOD/ShiLtJ	ENSMUSG00190012232	lncRNA gene	Chr13:43684310-43696229 (+)
NZO/HlLtJ	ENSMUSG00225036155	lncRNA gene	Chr13:47367944-47379859 (+)
PWK/PhJ	ENSLUMG00010021561	lncRNA gene	Chr13:42649012-42660921 (+)
SPRET/EiJ	ENSMSPG00010030078	lncRNA gene	Chr13:42750056-42761898 (+)
WSB/EiJ	ENSIUOG00005027742	lncRNA gene	Chr13:42839666-42851540 (+)

Homology

• Gene Tree
  Gm46412
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2

• Ensembl
  ENSMUSG00000120329 (Evidence)
• NCBI Gene
  108168080

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120329	Ensembl Gene Model | MGI Sequence Detail	15767	C57BL/6J
transcript	ENSMUST00000243401	Ensembl | MGI Sequence Detail	1834	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm46412:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119610	Chr13:46878736-46878748 (+)	11 bp
Tssr119611	Chr13:46878922-46878947 (+)	204 bp
Tssr119612	Chr13:46889530-46889533 (+)	10,801 bp
Tssr119613	Chr13:46889579-46889614 (+)	10,866 bp